Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
84153
Gene name Gene Name - the full gene name approved by the HGNC.
Ribonuclease H2 subunit C
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
RNASEH2C
Synonyms (NCBI Gene) Gene synonyms aliases
AGS3, AYP1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
AGS3
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q13.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a ribonuclease H subunit that can cleave ribonucleotides from RNA:DNA duplexes. Mutations in this gene cause Aicardi-Goutieres syndrome-3, a disease that causes severe neurologic dysfunction. A pseudogene for this gene has been identifie
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs76091978 G>A Likely-pathogenic Missense variant, coding sequence variant
rs78635798 G>A Likely-pathogenic, pathogenic-likely-pathogenic Missense variant, coding sequence variant
rs772940104 ->C Likely-pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1308726 hsa-miR-1179 CLIP-seq
MIRT1308727 hsa-miR-1266 CLIP-seq
MIRT1308728 hsa-miR-1303 CLIP-seq
MIRT1308729 hsa-miR-1972 CLIP-seq
MIRT1308730 hsa-miR-3130-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183, 32814053
GO:0005634 Component Nucleus IEA
GO:0006401 Process RNA catabolic process IBA 21873635
GO:0006401 Process RNA catabolic process IDA 21177858
GO:0032299 Component Ribonuclease H2 complex IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
610330 24116 ENSG00000172922
Protein
UniProt ID Q8TDP1
Protein name Ribonuclease H2 subunit C (RNase H2 subunit C) (Aicardi-Goutieres syndrome 3 protein) (AGS3) (RNase H1 small subunit) (Ribonuclease HI subunit C)
Protein function Non catalytic subunit of RNase H2, an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. M
PDB 3P56 , 3PUF , 8YJZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08615 RNase_H2_suC 28 157 Ribonuclease H2 non-catalytic subunit (Ylr154p-like) Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16845400}.
Sequence
Sequence length 164
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  DNA replication  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Aicardi goutieres syndrome AICARDI-GOUTIERES SYNDROME, Aicardi-Goutières syndrome, AICARDI-GOUTIERES SYNDROME 3 rs78635798, rs75184679, rs74555752, rs121434516, rs121434517, rs267607027, rs121434518, rs121434519, rs121434520, rs72556554, rs78218009, rs74556809, rs78408272, rs78846775, rs121908117
View all (95 more)
25604658, 27411419, 20131292, 17846997, 16845400, 23322642, 29150899, 24357685
Aortic aneurysm Aortic Aneurysm rs1555554098, rs267606902, rs121434526, rs121434527, rs121434528, rs387906592, rs387906781, rs387906782, rs397516685, rs397514037, rs112901682, rs397515325, rs397515330, rs794728025, rs112602953
View all (29 more)
Arthritis Arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Autoinflammatory disease Autoinflammatory disorder rs777759523, rs121434352, rs28940578, rs28940580, rs121908146, rs121908148, rs121908150, rs80338807, rs121908679, rs104895319, rs104894176, rs28933973, rs28933376, rs137854447, rs61736587
View all (32 more)
25604658
Unknown
Disease term Disease name Evidence References Source
Alloimmune thrombocytopenia Neonatal Alloimmune Thrombocytopenia ClinVar
Porencephalic cyst Porencephalic cyst ClinVar
Ptosis Blepharoptosis, Ptosis ClinVar
Asthma Asthma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Aicardi Goutieres syndrome Associate 17846997, 19015152, 23592335, 24183309, 25604658, 25769924, 31559893, 33482855, 33981319, 38041217
Breast Neoplasms Associate 30622304
Death Associate 17846997
Inflammation Associate 30622304
Lupus Erythematosus Systemic Associate 28108556
Plaque Atherosclerotic Associate 30622304