Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
84133
Gene name Gene Name - the full gene name approved by the HGNC.
Zinc and ring finger 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ZNRF3
Synonyms (NCBI Gene) Gene synonyms aliases
BK747E2.3, RNF203
Chromosome Chromosome number
22
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
22q12.1
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT027017 hsa-miR-103a-3p Sequencing 20371350
MIRT031450 hsa-miR-16-5p Sequencing 20371350
MIRT042789 hsa-miR-339-5p CLASH 23622248
MIRT438327 hsa-miR-146b-5p qRT-PCR 24064622
MIRT438327 hsa-miR-146b-5p qRT-PCR 24064622
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004842 Function Ubiquitin-protein transferase activity IDA 22575959
GO:0005109 Function Frizzled binding IBA
GO:0005109 Function Frizzled binding IEA
GO:0005109 Function Frizzled binding IPI 22575959
GO:0005515 Function Protein binding IPI 22575959, 24165923, 29769720, 31073040, 32296183
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
612062 18126 ENSG00000183579
Protein
UniProt ID Q9ULT6
Protein name E3 ubiquitin-protein ligase ZNRF3 (EC 2.3.2.27) (RING finger protein 203) (RING-type E3 ubiquitin transferase ZNRF3) (Zinc/RING finger protein 3)
Protein function E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components Frizzled and LRP6. Acts on both canonical and non-canonical
PDB 8G4Y , 8XFP , 8XFS , 8XFT , 8Y69
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18212 ZNRF_3_ecto 101 208 ZNRF-3 Ectodomain Domain
PF17123 zf-RING_11 292 320 RING-like zinc finger Domain
Sequence
MRPRSGGRPGATGRRRRRLRRRPRGLRCSRLPPPPPLPLLLGLLLAAAGPGAARAKETAF
VEVVLFESSPSGDYTTYTTGLTGRFSRAGATLSAEGEIVQMHPLGLCNNNDEEDLYEYGW
VGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPV
VYVKGADAIKLMNIVNKQKVARARIQHR
PPRQPTEYFDMGIFLAFFVVVSLVCLILLVKI
KLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKY
IDGEELRVIPCTHRFHRKCV
DPWLLQHHTCPHCRHNIIEQKGNPSAVCVETSNLSRGRQQ
RVTLPVHYPGRVHRTNAIPAYPTRTSMDSHGNPVTLLTMDRHGEQSLYSPQTPAYIRSYP
PLHLDHSLAAHRCGLEHRAYSPAHPFRRPKLSGRSFSKAACFSQYETMYQHYYFQGLSYP
EQEGQSPPSLAPRGPARAFPPSGSGSLLFPTVVHVAPPSHLESGSTSSFSCYHGHRSVCS
GYLADCPGSDSSSSSSSGQCHCSSSDSVVDCTEVSNQGVYGSCSTFRSSLSSDYDPFIYR
SRSPCRASEAGGSGSSGRGPALCFEGSPPPEELPAVHSHGAGRGEPWPGPASPSGDQVST
CSLEMNYSSNSSLEHRGPNSSTSEVGLEASPGAAPDLRRTWKGGHELPSCACCCEPQPSP
AGPSAGAAGSSTLFLGPHLYEGSGPAGGEPQSGSSQGLYGLHPDHLPRTDGVKYEGLPCC
FYEEKQVARGGGGGSGCYTEDYSVSVQYTLTEEPPPGCYPGARDLSQRIPIIPEDVDCDL
GLPSDCQGTHSLGSWGGTRGPDTPRPHRGLGATREEERALCCQARALLRPGCPPEEAGAV
RANFPSALQDTQESSTTATEAAGPRSHSADSSSPGA
Sequence length 936
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Wnt signaling pathway   Regulation of FZD by ubiquitination
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Acne acne vulgaris N/A N/A GWAS
Breast Cancer Breast cancer N/A N/A GWAS
Colorectal Cancer Colorectal cancer N/A N/A GWAS
Diabetes Type 2 diabetes N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adrenocortical Adenoma Associate 33564960
Adrenocortical Carcinoma Associate 25490274, 29581542, 29872083, 33513905, 33564960
Carcinogenesis Associate 27661107, 33513905, 35040131
Carcinoma Hepatocellular Associate 40264052
Carcinoma Squamous Cell Associate 28901451
Cardiotoxicity Associate 29247589
Chromosome Disorders Associate 36631813
Diabetic Nephropathies Associate 38189041
Disorder of Sex Development 46 XY Associate 36631813
Esophageal Squamous Cell Carcinoma Associate 30816445