Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8291
Gene name Gene Name - the full gene name approved by the HGNC.
Dysferlin
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
DYSF
Synonyms (NCBI Gene) Gene synonyms aliases
FER1L1, LGMD2B, LGMDR2, MMD1
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2p13.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene belongs to the ferlin family and is a skeletal muscle protein found associated with the sarcolemma. It is involved in muscle contraction and contains C2 domains that play a role in calcium-mediated membrane fusion events,
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28937581 G>T Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs34061568 A>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant
rs34387018 C>A,G,T Benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant, missense variant, non coding transcript variant
rs34997054 G>A Benign-likely-benign, likely-pathogenic, benign Coding sequence variant, missense variant, non coding transcript variant
rs61746816 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, synonymous variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT949882 hsa-miR-1252 CLIP-seq
MIRT949883 hsa-miR-1275 CLIP-seq
MIRT949884 hsa-miR-3175 CLIP-seq
MIRT949885 hsa-miR-3940-5p CLIP-seq
MIRT949886 hsa-miR-4434 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002280 Process Monocyte activation involved in immune response IEA
GO:0002280 Process Monocyte activation involved in immune response IMP 18276788
GO:0002281 Process Macrophage activation involved in immune response IEA
GO:0002281 Process Macrophage activation involved in immune response IMP 18276788
GO:0005509 Function Calcium ion binding IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603009 3097 ENSG00000135636
Protein
UniProt ID O75923
Protein name Dysferlin (Dystrophy-associated fer-1-like protein) (Fer-1-like protein 1)
Protein function Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion. Plays a role in the sarcolemma repair mechanism of both skeletal muscle and cardiomyocytes that permits rapid resealing of membranes disrupted by me
PDB 4CAH , 4CAI , 4IHB , 4IQH , 7JOF , 7K6B , 7KRB , 9B8K , 9B8L
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00168 C2 1 103 C2 domain Domain
PF00168 C2 220 323 C2 domain Domain
PF08151 FerI 324 374 FerI (NUC094) domain Domain
PF00168 C2 379 496 C2 domain Domain
PF08165 FerA 695 759 FerA (NUC095) domain Domain
PF08150 FerB 786 859 FerB (NUC096) domain Domain
PF00168 C2 1152 1260 C2 domain Domain
PF00168 C2 1333 1439 C2 domain Domain
PF00168 C2 1578 1678 C2 domain Domain
PF00168 C2 1812 1944 C2 domain Domain
PF16165 Ferlin_C 1971 2075 Ferlin C-terminus Family
Tissue specificity TISSUE SPECIFICITY: Expressed in skeletal muscle, myoblast, myotube and in the syncytiotrophoblast (STB) of the placenta (at protein level). Ubiquitous. Highly expressed in skeletal muscle. Also found in heart, brain, spleen, intestine, placenta and at lo
Sequence
MLRVFILYAENVHTPDTDISDAYCSAVFAGVKKRTKVIKNSVNPVWNEGFEWDLKGIPLD
QGSELHVVVKDHETMGRNRFLGEAKVPLREVLATPSLSASFNA
PLLDTKKQPTGASLVLQ
VSYTPLPGAVPLFPPPTPLEPSPTLPDLDVVADTGGEEDTEDQGLTGDEAEPFLDQSGGP
GAPTTPRKLPSRPPPHYPGIKRKRSAPTSRKLLSDKPQDFQIRVQVIEGRQLPGVNIKPV
VKVTAAGQTKRTRIHKGNSPLFNETLFFNLFDSPGELFDEPIFITVVDSRSLRTDALLGE
FRMDVGTIYREPRHAYLRKWLLL
SDPDDFSAGARGYLKTSLCVLGPGDEAPLERKDPSED
KEDIESNLLRPTGV
ALRGAHFCLKVFRAEDLPQMDDAVMDNVKQIFGFESNKKNLVDPFV
EVSFAGKMLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRIIDWDRLTHNDIVATTYL
SMSKISAPGGEIEEEP
AGAVKPSKASDLDDYLGFLPTFGPCYINLYGSPREFTGFPDPYT
ELNTGKGEGVAYRGRLLLSLETKLVEHSEQKVEDLPADDILRVEKYLRRRKYSLFAAFYS
ATMLQDVDDAIQFEVSIGNYGNKFDMTCLPLASTTQYSRAVFDGCHYYYLPWGNVKPVVV
LSSYWEDISHRIETQNQLLGIADRLEAGLEQVHLALKAQCSTEDVDSLVAQLTDELIAGC
SQPLGDIHETPSATHLDQYLYQLRTHHLSQITEAALALK
LGHSELPAALEQAEDWLLRLR
ALAEEPQNSLPDIVIWMLQGDKRVAYQRVPAHQVLFSRRGANYCGKNCGKLQTIFLKYPM
EKVPGARMPVQIRVKLWFG
LSVDEKEFNQFAEGKLSVFAETYENETKLALVGNWGTTGLT
YPKFSDVTGKIKLPKDSFRPSAGWTWAGDWFVCPEKTLLHDMDAGHLSFVEEVFENQTRL
PGGQWIYMSDNYTDVNGEKVLPKDDIECPLGWKWEDEEWSTDLNRAVDEQGWEYSITIPP
ERKPKHWVPAEKMYYTHRRRRWVRLRRRDLSQMEALKRHRQAEAEGEGWEYASLFGWKFH
LEYRKTDAFRRRRWRRRMEPLEKTGPAAVFALEGALGGVMDDKSEDSMSVSTLSFGVNRP
TISCIFDYGNRYHLRCYMYQARDLAAMDKDSFSDPYAIVSFLHQSQKTVVVKNTLNPTWD
QTLIFYEIEIFGEPATVAEQPPSIVVELYDHDTYGADEFMGRCICQPSLERMPRLAWFPL

TRGSQPSGELLASFELIQREKPAIHHIPGFEVQETSRILDESEDTDLPYPPPQREANIYM
VPQNIKPALQRTAIEILAWGLRNMKSYQLANISSPSLVVECGGQTVQSCVIRNLRKNPNF
DICTLFMEVMLPREELYCPPITVKVIDNRQFGRRPVVGQCTIRSLESFLCDPYSAESPS
P
QGGPDDVSLLSPGEDVLIDIDDKEPLIPIQEEEFIDWWSKFFASIGEREKCGSYLEKDFD
TLKVYDTQLENVEAFEGLSDFCNTFKLYRGKTQEETEDPSVIGEFKGLFKIYPLPEDPAI
PMPPRQFHQLAAQGPQECLVRIYIVRAFGLQPKDPNGKCDPYIKISIGKKSVSDQDNYIP
CTLEPVFGKMFELTCTLPLEKDLKITLYDYDLLSKDEKIGETVVDLENRLLSKFGARC
GL
PQTYCVSGPNQWRDQLRPSQLLHLFCQQHRVKAPVYRTDRVMFQDKEYSIEEIEAGRIPN
PHLGPVEERLALHVLQQQGLVPEHVESRPLYSPLQPDIEQGKLQMWVDLFPKALGRPGPP
FNITPRRARRFFLRCIIWNTRDVILDDLSLTGEKMSDIYVKGWMIGFEEHKQKTDVHYRS
LGGEGNFNWRFIFPFDYLPAEQVCTIAKKDAFWRLDKTESKIPARVVFQIWDNDKFSFDD
FLGSLQLDLNRMPKPAKTAKKCSL
DQLDDAFHPEWFVSLFEQKTVKGWWPCVAEEGEKKI
LAGKLEMTLEIVAESEHEERPAGQGRDEPNMNPKLEDPRRPDTSFLWFTSPYKTMKFILW
RRFRWAIILFIILFILLLFLAIFIYAFPNYAAMKL
VKPFS
Sequence length 2080
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Smooth Muscle Contraction
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Limb-girdle muscular dystrophy Autosomal recessive limb-girdle muscular dystrophy type 2B, Autosomal recessive limb-girdle muscular dystrophy rs369607332, rs1259378167, rs373585652, rs1574264671, rs886044379, rs398123767, rs1558708492, rs121908957, rs778092738, rs121908961, rs886039573, rs1474151297, rs1395588065, rs1553420848, rs140108514
View all (177 more)
N/A
Miyoshi Muscular Dystrophy miyoshi muscular dystrophy 1 rs909564120, rs886042584, rs1553522104, rs727503912, rs1057519132, rs398123789, rs1573100371, rs727503909, rs121908955, rs369607332, rs398123767, rs121908957, rs886039573, rs756328339, rs398123777
View all (107 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Asthma Asthma N/A N/A GWAS
Cardiomyopathy Primary dilated cardiomyopathy N/A N/A ClinVar
Distal Myopathy With Anterior Tibial Onset distal myopathy with anterior tibial onset N/A N/A GenCC
Myopathy myopathy N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
AA amyloidosis Associate 20544924
Alstrom Syndrome Associate 26077327
Anemia Diamond Blackfan Associate 24454878
Anterior Compartment Syndrome Associate 19528035, 22318734, 26444858
Asthma Associate 34510493
Bronchopulmonary Dysplasia Associate 40244055
Carcinoma Hepatocellular Associate 29385134
Cone Rod Dystrophies Associate 26077327
Corneal Dystrophies Hereditary Associate 20595382, 21412170, 28904177
Crohn Disease Associate 31956234