ZNF93 (zinc finger protein 93)

Gene

• Entrez ID: 81931
• Gene name: Zinc finger protein 93
• Gene symbol: ZNF93
• Synonyms (NCBI Gene): HPF34, HTF34, TF34, ZNF505
• Chromosome: 19
• Chromosome location: 19p12

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT525209	hsa-miR-3609	PAR-CLIP	22012620
MIRT525208	hsa-miR-548ah-5p	PAR-CLIP	22012620
MIRT525207	hsa-miR-106a-5p	PAR-CLIP	22012620
MIRT525206	hsa-miR-106b-5p	PAR-CLIP	22012620
MIRT525205	hsa-miR-17-5p	PAR-CLIP	22012620
MIRT525204	hsa-miR-20a-5p	PAR-CLIP	22012620
MIRT525203	hsa-miR-20b-5p	PAR-CLIP	22012620
MIRT525202	hsa-miR-519d-3p	PAR-CLIP	22012620
MIRT525201	hsa-miR-526b-3p	PAR-CLIP	22012620
MIRT525200	hsa-miR-93-5p	PAR-CLIP	22012620
MIRT525199	hsa-miR-4796-3p	PAR-CLIP	22012620
MIRT525198	hsa-miR-142-5p	PAR-CLIP	22012620
MIRT525197	hsa-miR-5590-3p	PAR-CLIP	22012620
MIRT525196	hsa-miR-1180-5p	PAR-CLIP	22012620
MIRT525195	hsa-miR-7114-3p	PAR-CLIP	22012620
MIRT525194	hsa-miR-548aj-5p	PAR-CLIP	22012620
MIRT525193	hsa-miR-548f-5p	PAR-CLIP	22012620
MIRT525192	hsa-miR-548g-5p	PAR-CLIP	22012620
MIRT525191	hsa-miR-548x-5p	PAR-CLIP	22012620
MIRT525190	hsa-miR-1468-3p	PAR-CLIP	22012620
MIRT525189	hsa-miR-7973	PAR-CLIP	22012620
MIRT525188	hsa-miR-548aw	PAR-CLIP	22012620
MIRT525209	hsa-miR-3609	PAR-CLIP	22012620
MIRT525208	hsa-miR-548ah-5p	PAR-CLIP	22012620
MIRT525207	hsa-miR-106a-5p	PAR-CLIP	22012620
MIRT525206	hsa-miR-106b-5p	PAR-CLIP	22012620
MIRT525205	hsa-miR-17-5p	PAR-CLIP	22012620
MIRT525204	hsa-miR-20a-5p	PAR-CLIP	22012620
MIRT525203	hsa-miR-20b-5p	PAR-CLIP	22012620
MIRT525202	hsa-miR-519d-3p	PAR-CLIP	22012620
MIRT525201	hsa-miR-526b-3p	PAR-CLIP	22012620
MIRT525200	hsa-miR-93-5p	PAR-CLIP	22012620
MIRT525199	hsa-miR-4796-3p	PAR-CLIP	22012620
MIRT525198	hsa-miR-142-5p	PAR-CLIP	22012620
MIRT525197	hsa-miR-5590-3p	PAR-CLIP	22012620
MIRT525196	hsa-miR-1180-5p	PAR-CLIP	22012620
MIRT525195	hsa-miR-7114-3p	PAR-CLIP	22012620
MIRT525194	hsa-miR-548aj-5p	PAR-CLIP	22012620
MIRT525193	hsa-miR-548f-5p	PAR-CLIP	22012620
MIRT525192	hsa-miR-548g-5p	PAR-CLIP	22012620
MIRT525191	hsa-miR-548x-5p	PAR-CLIP	22012620
MIRT525190	hsa-miR-1468-3p	PAR-CLIP	22012620
MIRT525189	hsa-miR-7973	PAR-CLIP	22012620
MIRT525188	hsa-miR-548aw	PAR-CLIP	22012620
MIRT1542672	hsa-miR-1193	CLIP-seq
MIRT1542673	hsa-miR-1224-5p	CLIP-seq
MIRT1542674	hsa-miR-1238	CLIP-seq
MIRT1542675	hsa-miR-1255a	CLIP-seq
MIRT1542676	hsa-miR-1255b	CLIP-seq
MIRT1542677	hsa-miR-1265	CLIP-seq
MIRT1542678	hsa-miR-1294	CLIP-seq
MIRT1542679	hsa-miR-145	CLIP-seq
MIRT1542680	hsa-miR-1825	CLIP-seq
MIRT1542681	hsa-miR-1911	CLIP-seq
MIRT1542682	hsa-miR-199a-5p	CLIP-seq
MIRT1542683	hsa-miR-199b-5p	CLIP-seq
MIRT1542684	hsa-miR-221	CLIP-seq
MIRT1542685	hsa-miR-222	CLIP-seq
MIRT1542686	hsa-miR-3064-3p	CLIP-seq
MIRT1542687	hsa-miR-3119	CLIP-seq
MIRT1542688	hsa-miR-3122	CLIP-seq
MIRT1542689	hsa-miR-3174	CLIP-seq
MIRT1542690	hsa-miR-3182	CLIP-seq
MIRT1542691	hsa-miR-323-3p	CLIP-seq
MIRT1542692	hsa-miR-3659	CLIP-seq
MIRT1542693	hsa-miR-3691-5p	CLIP-seq
MIRT1542694	hsa-miR-377	CLIP-seq
MIRT1542695	hsa-miR-3913-5p	CLIP-seq
MIRT1542696	hsa-miR-409-5p	CLIP-seq
MIRT1542697	hsa-miR-412	CLIP-seq
MIRT1542698	hsa-miR-4276	CLIP-seq
MIRT1542699	hsa-miR-4316	CLIP-seq
MIRT1542700	hsa-miR-4474-3p	CLIP-seq
MIRT1542701	hsa-miR-4491	CLIP-seq
MIRT1542702	hsa-miR-4493	CLIP-seq
MIRT1542703	hsa-miR-450b-3p	CLIP-seq
MIRT1542704	hsa-miR-4635	CLIP-seq
MIRT1542705	hsa-miR-4657	CLIP-seq
MIRT1542706	hsa-miR-4658	CLIP-seq
MIRT1542707	hsa-miR-4659a-3p	CLIP-seq
MIRT1542708	hsa-miR-4659b-3p	CLIP-seq
MIRT1542709	hsa-miR-4715-3p	CLIP-seq
MIRT1542710	hsa-miR-4727-5p	CLIP-seq
MIRT1542711	hsa-miR-4751	CLIP-seq
MIRT1542712	hsa-miR-4752	CLIP-seq
MIRT1542713	hsa-miR-4764-5p	CLIP-seq
MIRT1542714	hsa-miR-4769-3p	CLIP-seq
MIRT1542715	hsa-miR-4776-3p	CLIP-seq
MIRT1542716	hsa-miR-4797-5p	CLIP-seq
MIRT1542717	hsa-miR-548v	CLIP-seq
MIRT1542718	hsa-miR-574-5p	CLIP-seq
MIRT1542719	hsa-miR-603	CLIP-seq
MIRT1542720	hsa-miR-644	CLIP-seq
MIRT1542721	hsa-miR-765	CLIP-seq
MIRT1542722	hsa-miR-769-3p	CLIP-seq
MIRT2163701	hsa-miR-1184	CLIP-seq
MIRT2163702	hsa-miR-1205	CLIP-seq
MIRT2163703	hsa-miR-1245	CLIP-seq
MIRT2163704	hsa-miR-142-3p	CLIP-seq
MIRT1542681	hsa-miR-1911	CLIP-seq
MIRT2163705	hsa-miR-2052	CLIP-seq
MIRT1542686	hsa-miR-3064-3p	CLIP-seq
MIRT1542687	hsa-miR-3119	CLIP-seq
MIRT2163706	hsa-miR-3158-5p	CLIP-seq
MIRT1542689	hsa-miR-3174	CLIP-seq
MIRT2163707	hsa-miR-3184	CLIP-seq
MIRT2163708	hsa-miR-3607-3p	CLIP-seq
MIRT1542692	hsa-miR-3659	CLIP-seq
MIRT2163709	hsa-miR-3674	CLIP-seq
MIRT1542694	hsa-miR-377	CLIP-seq
MIRT1542697	hsa-miR-412	CLIP-seq
MIRT2163710	hsa-miR-423-5p	CLIP-seq
MIRT1542698	hsa-miR-4276	CLIP-seq
MIRT1542700	hsa-miR-4474-3p	CLIP-seq
MIRT2163711	hsa-miR-4484	CLIP-seq
MIRT1542702	hsa-miR-4493	CLIP-seq
MIRT2163712	hsa-miR-4527	CLIP-seq
MIRT1542704	hsa-miR-4635	CLIP-seq
MIRT2163713	hsa-miR-4650-5p	CLIP-seq
MIRT1542706	hsa-miR-4658	CLIP-seq
MIRT2163714	hsa-miR-4687-3p	CLIP-seq
MIRT2163715	hsa-miR-4694-3p	CLIP-seq
MIRT1542709	hsa-miR-4715-3p	CLIP-seq
MIRT2163716	hsa-miR-4753-5p	CLIP-seq
MIRT2163717	hsa-miR-4763-5p	CLIP-seq
MIRT1542715	hsa-miR-4776-3p	CLIP-seq
MIRT2163718	hsa-miR-4802-3p	CLIP-seq
MIRT2163719	hsa-miR-522	CLIP-seq
MIRT2163720	hsa-miR-548al	CLIP-seq
MIRT2163721	hsa-miR-548an	CLIP-seq
MIRT1542718	hsa-miR-574-5p	CLIP-seq
MIRT1542720	hsa-miR-644	CLIP-seq
MIRT2163722	hsa-miR-877	CLIP-seq
MIRT1542673	hsa-miR-1224-5p	CLIP-seq
MIRT1542675	hsa-miR-1255a	CLIP-seq
MIRT1542676	hsa-miR-1255b	CLIP-seq
MIRT1542678	hsa-miR-1294	CLIP-seq
MIRT1542679	hsa-miR-145	CLIP-seq
MIRT1542680	hsa-miR-1825	CLIP-seq
MIRT2382920	hsa-miR-18a	CLIP-seq
MIRT2382921	hsa-miR-18b	CLIP-seq
MIRT1542681	hsa-miR-1911	CLIP-seq
MIRT1542682	hsa-miR-199a-5p	CLIP-seq
MIRT1542683	hsa-miR-199b-5p	CLIP-seq
MIRT2382922	hsa-miR-205	CLIP-seq
MIRT1542684	hsa-miR-221	CLIP-seq
MIRT1542685	hsa-miR-222	CLIP-seq
MIRT1542686	hsa-miR-3064-3p	CLIP-seq
MIRT1542687	hsa-miR-3119	CLIP-seq
MIRT2382923	hsa-miR-3121-3p	CLIP-seq
MIRT1542689	hsa-miR-3174	CLIP-seq
MIRT1542690	hsa-miR-3182	CLIP-seq
MIRT1542691	hsa-miR-323-3p	CLIP-seq
MIRT2382924	hsa-miR-362-5p	CLIP-seq
MIRT1542692	hsa-miR-3659	CLIP-seq
MIRT2382925	hsa-miR-3664-5p	CLIP-seq
MIRT1542693	hsa-miR-3691-5p	CLIP-seq
MIRT1542694	hsa-miR-377	CLIP-seq
MIRT2382926	hsa-miR-3945	CLIP-seq
MIRT1542697	hsa-miR-412	CLIP-seq
MIRT2382927	hsa-miR-4253	CLIP-seq
MIRT1542698	hsa-miR-4276	CLIP-seq
MIRT1542699	hsa-miR-4316	CLIP-seq
MIRT2382928	hsa-miR-4436a	CLIP-seq
MIRT1542700	hsa-miR-4474-3p	CLIP-seq
MIRT1542702	hsa-miR-4493	CLIP-seq
MIRT1542704	hsa-miR-4635	CLIP-seq
MIRT2382929	hsa-miR-4639-3p	CLIP-seq
MIRT1542706	hsa-miR-4658	CLIP-seq
MIRT1542707	hsa-miR-4659a-3p	CLIP-seq
MIRT1542708	hsa-miR-4659b-3p	CLIP-seq
MIRT1542709	hsa-miR-4715-3p	CLIP-seq
MIRT1542710	hsa-miR-4727-5p	CLIP-seq
MIRT2382930	hsa-miR-4735-3p	CLIP-seq
MIRT1542711	hsa-miR-4751	CLIP-seq
MIRT1542715	hsa-miR-4776-3p	CLIP-seq
MIRT2382931	hsa-miR-500b	CLIP-seq
MIRT2382932	hsa-miR-501-5p	CLIP-seq
MIRT1542717	hsa-miR-548v	CLIP-seq
MIRT1542718	hsa-miR-574-5p	CLIP-seq
MIRT1542719	hsa-miR-603	CLIP-seq
MIRT1542720	hsa-miR-644	CLIP-seq
MIRT1542686	hsa-miR-3064-3p	CLIP-seq
MIRT1542694	hsa-miR-377	CLIP-seq
MIRT1542697	hsa-miR-412	CLIP-seq
MIRT1542702	hsa-miR-4493	CLIP-seq
MIRT1542709	hsa-miR-4715-3p	CLIP-seq
MIRT1542715	hsa-miR-4776-3p	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	IEA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0001227	Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	IDA	25274305
GO:0001227	Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	IEA
GO:0003677	Function	DNA binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	NAS	2023909
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	TAS
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0008270	Function	Zinc ion binding	IEA
GO:0008270	Function	Zinc ion binding	NAS	2023909
GO:0010526	Process	Transposable element silencing	IDA	25274305
GO:0010526	Process	Transposable element silencing	IEA
GO:0046872	Function	Metal ion binding	IEA

Other IDs

• MIM: 603975
• HGNC: 13169
• e!Ensembl: ENSG00000184635

Protein

• UniProt ID: P35789
• Protein name: Zinc finger protein 93 (Zinc finger protein 505) (Zinc finger protein HTF34)
• Protein function: Transcription factor specifically required to repress long interspersed nuclear element 1 (L1) retrotransposons: recognizes and binds L1 sequences and repress their expression by recruiting a repressive complex containing TRIM28/KAP1 (PubMed:252
• PDB: 7Z36
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF01352	KRAB	3 → 44	KRAB box	Family
  PF13912	zf-C2H2_6	173 → 198		Domain
  PF00096	zf-C2H2	201 → 223	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	229 → 251	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	257 → 279	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	285 → 307	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	313 → 335	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	341 → 363	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	369 → 391	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	397 → 419	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	425 → 447	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	453 → 475	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	481 → 503	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	509 → 531	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	565 → 587	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	593 → 615	Zinc finger, C2H2 type	Domain

• Sequence:

  MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYSNLVFLGIVVSKPDLIAHLEQGK
  KPLTMKRHEMVANPSVICSHFAQDLWPEQNIKDSFQKVILRRYEKRGHGNLQLIKRCESV
  DECKVHTGGYNGLNQCSTTTQSKVFQCDKYGKVFHKFSNSNRHNIRHTEKKPFKCIECGK
  AFNQFSTLITHKKIHTGEKPYICEECGKAFKYSSALNTHKRIHTGEKPYKCDKCDKAFIA
  SSTLSKHEIIHTGKKPYKCEECGKAFNQSSTLTKHKKIHTGEKPYKCEECGKAFNQSSTL
  TKHKKIHTGEKPYVCEECGKAFKYSRILTTHKRIHTGEKPYKCNKCGKAFIASSTLSRHE
  FIHMGKKHYKCEECGKAFIWSSVLTRHKRVHTGEKPYKCEECGKAFKYSSTLSSHKRSHT
  GEKPYKCEECGKAFVASSTLSKHEIIHTGKKPYKCEECGKAFNQSSSLTKHKKIHTGEKP
  YKCEECGKAFNQSSSLTKHKKIHTGEKPYKCEECGKAFNQSSTLIKHKKIHTREKPYKCE
  ECGKAFHLSTHLTTHKILHTGEKPYRCRECGKAFNHSATLSSHKKIHSGEKPYECDKCGK
  AFISPSSLSRHEIIHTGEKP

• Sequence length: 620