Gene Gene information from NCBI Gene database.
Entrez ID 81035
Gene name Collectin subfamily member 12
Gene symbol COLEC12
Synonyms (NCBI Gene)
CLP1NSR2SCARA4SRCL
Chromosome 18
Chromosome location 18p11.32
Summary This gene encodes a member of the C-lectin family, proteins that possess collagen-like sequences and carbohydrate recognition domains. This protein is a scavenger receptor that displays several functions associated with host defense. It can bind to carboh
miRNA miRNA information provided by mirtarbase database.
259
miRTarBase ID miRNA Experiments Reference
MIRT021483 hsa-miR-9-5p Sequencing 20371350
MIRT025879 hsa-miR-7-5p Sequencing 20371350
MIRT029943 hsa-miR-26b-5p Microarray 19088304
MIRT615075 hsa-miR-520f-3p HITS-CLIP 23824327
MIRT615074 hsa-miR-302c-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0002682 Process Regulation of immune system process IEA
GO:0005044 Function Scavenger receptor activity IDA 11564734
GO:0005044 Function Scavenger receptor activity TAS 11162630
GO:0005515 Function Protein binding IPI 22396535, 26922829, 33961781
GO:0005534 Function Galactose binding NAS 11564734
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607621 16016 ENSG00000158270
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q5KU26
Protein name Collectin-12 (Collectin placenta protein 1) (CL-P1) (hCL-P1) (Nurse cell scavenger receptor 2) (Scavenger receptor class A member 4) (Scavenger receptor with C-type lectin)
Protein function Scavenger receptor that displays several functions associated with host defense. Promotes binding and phagocytosis of Gram-positive, Gram-negative bacteria and yeast. Mediates the recognition, internalization and degradation of oxidatively modif
PDB 2OX8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01391 Collagen 441 499 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 530 589 Collagen triple helix repeat (20 copies) Repeat
PF00059 Lectin_C 624 732 Lectin C-type domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in perivascular macrophages. Expressed in plaques-surrounding reactive astrocytes and in perivascular astrocytes associated with cerebral amyloid angiopathy (CAA) in the temporal cortex of Alzheimer patient (at protein level)
Sequence
MKDDFAEEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLYILCALLTITVAILGYK
VVEKMDNVTGGMETSRQTYDDKLTAVESDLKKLGDQTGKKAISTNSELSTFRSDILDLRQ
QLREITEKTSKNKDTLEKLQASGDALVDRQSQLKETLENNSFLITTVNKTLQAYNGYVTN
LQQDTSVLQGNLQNQMYSHNVVIMNLNNLNLTQVQQRNLITNLQRSVDDTSQAIQRIKND
FQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALAKANNDTLEDMNSQLNSFTGQMENI
TTISQANEQNLKDLQDLHKDAENRTAIKFNQLEERFQLFETDIVNIISNISYTAHHLRTL
TSNLNEVRTTCTDTLTKHTDDLTSLNNTLANIRLDSVSLRMQQDLMRSRLDTEVANLSVI
MEEMKLVDSKHGQLIKNFTILQGPPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGP
AGERGPIGPAGPPGERGGK
GSKGSQGPKGSRGSPGKPGPQGSSGDPGPPGPPGKEGLPGP
QGPPGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGPPGPPGPSGAV
VPLALQNEPTP
APEDNGCPPHWKNFTDKCYYFSVEKEIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMVG
RESHWIGLTDSERENEWKWLDGTSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYAGQWNDF
QCEDVNNFICEK
DRETVLSSAL
Sequence length 742
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Phagosome   Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Scavenging by Class A Receptors
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Colon adenocarcinoma Benign rs111310285 RCV005905182
Ovarian serous cystadenocarcinoma Benign rs111310285 RCV005905183
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Amyotrophic Lateral Sclerosis Associate 40033250
Ataxia Telangiectasia Associate 25887408
Breast Neoplasms Associate 36131924
Colorectal Neoplasms Associate 37144239
Diabetes Mellitus Type 2 Inhibit 36131924
Ehlers Danlos syndrome type 3 Associate 27518164
Glomerulonephritis Associate 37020564
Glomerulonephritis IGA Associate 37020564
Inflammation Associate 27518164
Medulloblastoma Associate 37083768