Gene Gene information from NCBI Gene database.
Entrez ID 8087
Gene name FMR1 autosomal homolog 1
Gene symbol FXR1
Synonyms (NCBI Gene)
CMYO9ACMYO9BCMYP9ACMYP9BFXR1PMYOPMILMYORIBF
Chromosome 3
Chromosome location 3q26.33
Summary The protein encoded by this gene is an RNA binding protein that interacts with the functionally-similar proteins FMR1 and FXR2. These proteins shuttle between the nucleus and cytoplasm and associate with polyribosomes, predominantly with the 60S ribosomal
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs769011065 AAAA>-,AAA,AAAAA Pathogenic Coding sequence variant, intron variant, frameshift variant
rs1577005361 ACAG>- Pathogenic Frameshift variant, coding sequence variant, intron variant
miRNA miRNA information provided by mirtarbase database.
566
miRTarBase ID miRNA Experiments Reference
MIRT022502 hsa-miR-124-3p Proteomics 18668037
MIRT025398 hsa-miR-34a-5p Proteomics 21566225
MIRT028542 hsa-miR-30a-5p Proteomics 18668040
MIRT045986 hsa-miR-125b-5p CLASH 23622248
MIRT045421 hsa-miR-149-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
101
GO ID Ontology Definition Evidence Reference
GO:0002183 Process Cytoplasmic translational initiation IDA 34731628
GO:0003676 Function Nucleic acid binding IEA
GO:0003723 Function RNA binding HDA 22658674, 22681889
GO:0003723 Function RNA binding IDA 35989368
GO:0003723 Function RNA binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600819 4023 ENSG00000114416
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P51114
Protein name RNA-binding protein FXR1 (FMR1 autosomal homolog 1) (hFXR1p)
Protein function mRNA-binding protein that acts as a regulator of mRNAs translation and/or stability, and which is required for various processes, such as neurogenesis, muscle development and spermatogenesis (PubMed:17382880, PubMed:20417602, PubMed:30067974, Pu
PDB 2CPQ , 3KUF , 3O8V
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18336 Tudor_FRX1 4 52 Fragile X mental retardation Tudor domain Domain
PF05641 Agenet 62 117 Agenet domain Domain
PF17904 KH_9 123 207 FMRP KH0 domain Domain
PF00013 KH_1 283 353 KH domain Domain
PF12235 FXMRP1_C_core 354 380 Fragile X-related 1 protein core C terminal Family
PF12235 FXMRP1_C_core 378 456 Fragile X-related 1 protein core C terminal Family
PF16096 FXR_C1 460 535 Fragile X-related 1 protein C-terminal region 2 Family
PF16097 FXR_C3 554 620 Fragile X-related 1 protein C-terminal region 3 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in all tissues examined including heart, brain, kidney and testis (PubMed:7781595, PubMed:9259278). In brain, present at high level in neurons and especially in the Purkinje cells at the interface between the granular layer a
Sequence
Sequence length 621
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Signaling by BRAF and RAF fusions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
16
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Intellectual disability Likely pathogenic rs754901294 RCV001291080
Myopathy, congenital proximal, with minicore lesions Pathogenic rs769011065, rs1322244059 RCV003152556
RCV003152557
Myopathy, congenital, with respiratory insufficiency and bone fractures Pathogenic rs1577005361 RCV001027877
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Congenital myopathy Uncertain significance rs1721862059, rs1721905984 RCV001267705
RCV001267707
Delayed gross motor development Uncertain significance rs2108444091 RCV002243563
Multiminicore myopathy Uncertain significance rs769011065 RCV001254703
Neonatal respiratory distress Uncertain significance rs2108444091 RCV002243563
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Amyotrophic Lateral Sclerosis Associate 33871026
Amyotrophic lateral sclerosis 1 Associate 33871026
Autism Spectrum Disorder Associate 30559470
Autistic Disorder Associate 33863995
Bipolar Disorder Associate 26433762, 28242499
Brain Diseases Associate 30167849
Carcinogenesis Associate 35194031
Carcinoma Hepatocellular Stimulate 37517087
Carcinoma Non Small Cell Lung Associate 32951448
Cardiovascular Abnormalities Associate 27357083