Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8029
Gene name Gene Name - the full gene name approved by the HGNC.
Cubilin
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CUBN
Synonyms (NCBI Gene) Gene synonyms aliases
IFCR, IGS, IGS1, MGA1, gp280
Disease Acronyms (UniProt) Disease acronyms from UniProt database
IGS1
Chromosome Chromosome number
10
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10p13
Summary Summary of gene provided in NCBI Entrez Gene.
Cubilin (CUBN) acts as a receptor for intrinsic factor-vitamin B12 complexes. The role of receptor is supported by the presence of 27 CUB domains. Cubulin is located within the epithelium of intestine and kidney. Mutations in CUBN may play a role in autos
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs11254385 C>A Likely-pathogenic Missense variant, initiator codon variant, genic upstream transcript variant
rs117620008 A>G Conflicting-interpretations-of-pathogenicity, uncertain-significance Genic downstream transcript variant, missense variant, coding sequence variant
rs121434430 G>A Pathogenic, likely-pathogenic Missense variant, genic upstream transcript variant, coding sequence variant
rs137998687 G>A,C Pathogenic Stop gained, missense variant, coding sequence variant
rs140970422 G>A Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT709694 hsa-miR-4760-3p HITS-CLIP 19536157
MIRT709693 hsa-miR-140-5p HITS-CLIP 19536157
MIRT709692 hsa-miR-3135b HITS-CLIP 19536157
MIRT709691 hsa-miR-3652 HITS-CLIP 19536157
MIRT709690 hsa-miR-4430 HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001894 Process Tissue homeostasis NAS 11994745
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 14576052, 20237569, 30523278
GO:0005765 Component Lysosomal membrane IEA
GO:0005783 Component Endoplasmic reticulum IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602997 2548 ENSG00000107611
Protein
UniProt ID O60494
Protein name Cubilin (460 kDa receptor) (Intestinal intrinsic factor receptor) (Intrinsic factor-cobalamin receptor) (Intrinsic factor-vitamin B12 receptor)
Protein function Endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake (PubMed:10371504, PubMed:11606717, PubMed:11717447, PubMed:14576052, PubMed:9572993). Acts together with LRP2 to mediate endocytosis o
PDB 3KQ4 , 6GJE
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00008 EGF 136 166 EGF-like domain Domain
PF07645 EGF_CA 170 217 Calcium-binding EGF domain Domain
PF07645 EGF_CA 263 303 Calcium-binding EGF domain Domain
PF07645 EGF_CA 305 347 Calcium-binding EGF domain Domain
PF12947 EGF_3 353 388 EGF domain Domain
PF00008 EGF 399 428 EGF-like domain Domain
PF00008 EGF 436 466 EGF-like domain Domain
PF00431 CUB 474 583 CUB domain Domain
PF00431 CUB 590 699 CUB domain Domain
PF00431 CUB 708 813 CUB domain Domain
PF00431 CUB 817 925 CUB domain Domain
PF00431 CUB 932 1039 CUB domain Domain
PF00431 CUB 1048 1158 CUB domain Domain
PF00431 CUB 1165 1274 CUB domain Domain
PF00431 CUB 1278 1386 CUB domain Domain
PF00431 CUB 1391 1503 CUB domain Domain
PF00431 CUB 1510 1616 CUB domain Domain
PF00431 CUB 1620 1731 CUB domain Domain
PF00431 CUB 1738 1847 CUB domain Domain
PF00431 CUB 1852 1960 CUB domain Domain
PF00431 CUB 1978 2088 CUB domain Domain
PF00431 CUB 2092 2210 CUB domain Domain
PF00431 CUB 2217 2331 CUB domain Domain
PF00431 CUB 2336 2445 CUB domain Domain
PF00431 CUB 2452 2562 CUB domain Domain
PF00431 CUB 2570 2684 CUB domain Domain
PF00431 CUB 2689 2798 CUB domain Domain
PF00431 CUB 2805 2916 CUB domain Domain
PF00431 CUB 2920 3032 CUB domain Domain
PF00431 CUB 3037 3147 CUB domain Domain
PF00431 CUB 3157 3271 CUB domain Domain
PF00431 CUB 3278 3390 CUB domain Domain
PF00431 CUB 3395 3504 CUB domain Domain
PF00431 CUB 3511 3621 CUB domain Domain
Tissue specificity TISSUE SPECIFICITY: Detected in kidney cortex (at protein level) (PubMed:9572993). Expressed in kidney proximal tubule cells, placenta, visceral yolk-sac cells and in absorptive intestinal cells. Expressed in the epithelium of intestine and kidney. {ECO:0
Sequence
MMNMSLPFLWSLLTLLIFAEVNGEAGELELQRQKRSINLQQPRMATERGNLVFLTGSAQN
IEFRTGSLGKIKLNDEDLSECLHQIQKNKEDIIELKGSAIGLPQNISSQIYQLNSKLVDL
ERKFQGLQQTVDKKVCSSNPCQNGGTCLNLHDSFFCICPPQWKGPLCSADVNECEIYSGT
PLSCQNGGTCVNTMGSYSCHCPPETYGPQCASKYDDC
EGGSVARCVHGICEDLMREQAGE
PKYSCVCDAGWMFSPNSPACTLDRDECSFQPGPCSTLVQCFNTQGSFYCGACPTGWQGNG
YIC
EDINECEINNGGCSVAPPVECVNTPGSSHCQACPPGYQGDGRVCTLTDICSVSNGGC
HPDASCSSTLGSLPLCTCLPGYTGNGYG
PNGCVQLSNICLSHPCLNGQCIDTVSGYFCKC
DSGWTGVN
CTENINECLSNPCLNGGTCVDGVDSFSCECTRLWTGALCQVPQQVCGESLSG
INGSFSYRSPDVGYVHDVNCFWVIKTEMGKVLRITFTFFRLESMDNCPHEFLQVYDGDSS
SAFQLGRFCGSSLPHELLSSDNALYFHLYSEHLRNGRGFTVRW
ETQQPECGGILTGPYGS
IKSPGYPGNYPPGRDCVWIVVTSPDLLVTFTFGTLSLEHHDDCNKDYLEIRDGPLYQDPL
LGKFCTTFSVPPLQTTGPFARIHFHSDSQISDQGFHITY
LTSPSDLRCGGNYTDPEGELF
LPELSGPFTHTRQCVYMMKQPQGEQIQINFTHVELQCQSDSSQNYIEVRDGETLLGKVCG
NGTISHIKSITNSVWIRFKIDASVEKASFRAVY
QVACGDELTGEGVIRSPFFPNVYPGER
TCRWTIHQPQSQVILLNFTVFEIGSSAHCETDYVEIGSSSILGSPENKKYCGTDIPSFIT
SVYNFLYVTFVKSSSTENHGFMAKF
SAEDLACGEILTESTGTIQSPGHPNVYPHGINCTW
HILVQPNHLIHLMFETFHLEFHYNCTNDYLEVYDTDSETSLGRYCGKSIPPSLTSSGNSL
MLVFVTDSDLAYEGFLINY
EAISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITV
RTGQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLW
LKFKSDQIDTRSGFSAYW
DGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHG
SAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLR
TDEGQQGRGFKAEY
RQTCENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNY
TFLAFDLEHHINCSTDYLELYDGPRQMGRYCGVDLPPPGSTTSSKLQVLLLTDGVGRREK
GFQMQW
FVYGCGGELSGATGSFSSPGFPNRYPPNKECIWYIRTDPGSSIQLTIHDFDVEY
HSRCNFDVLEIYGGPDFHSPRIAQLCTQRSPENPMQVSSTGNELAIRFKTDLSINGRGFN
ASW
QAVTGGCGGIFQAPSGEIHSPNYPSPYRSNTDCSWVIRVDRNHRVLLNFTDFDLEPQ
DSCIMAYDGLSSTMSRLARTCGREQLANPIVSSGNSLFLRFQSGPSRQNRGFRAQF
RQAC
GGHILTSSFDTVSSPRFPANYPNNQNCSWIIQAQPPLNHITLSFTHFELERSTTCARDFV
EILDGGHEDAPLRGRYCGTDMPHPITSFSSALTLRFVSDSSISAGGFHTTV
TASVSACGG
TFYMAEGIFNSPGYPDIYPPNVECVWNIVSSPGNRLQLSFISFQLEDSQDCSRDFVEIRE
GNATGHLVGRYCGNSFPLNYSSIVGHTLWVRFISDGSGSGTGFQATF
MKIFGNDNIVGTH
GKVASPFWPENYPHNSNYQWTVNVNASHVVHGRILEMDIEEIQNCYYDKLRIYDGPSIHA
RLIGAYCGTQTESFSSTGNSLTFHFYSDSSISGKGFLLEW
FAVDAPDGVLPTIAPGACGG
FLRTGDAPVFLFSPGWPDSYSNRVDCTWLIQAPDSTVELNILSLDIESHRTCAYDSLVIR
DGDNNLAQQLAVLCGREIPGPIRSTGEYMFIRFTSDSSVTRAGFNASF
HKSCGGYLHADR
GIITSPKYPETYPSNLNCSWHVLVQSGLTIAVHFEQPFQIPNGDSSCNQGDYLVLRNGPD
ICSPPLGPPGGNGHFCGSHASSTLFTSDNQMFVQFISDHSNEGQGFKIKY
EAKSLACGGN
VYIHDADSAGYVTSPNHPHNYPPHADCIWILAAPPETRIQLQFEDRFDIEVTPNCTSNYL
ELRDGVDSDAPILSKFCGTSLPSSQWSSGEVMYLRFRSDNSPTHVGFKAKY
SIAQCGGRV
PGQSGVVESIGHPTLPYRDNLFCEWHLQGLSGHYLTISFEDFNLQNSSGCEKDFVEIWDN
HTSGNILGRYCGNTIPDSIDTSSNTAVVRFVTDGSVTASGFRLRF
ESSMEECGGDLQGSI
GTFTSPNYPNPNPHGRICEWRITAPEGRRITLMFNNLRLATHPSCNNEHVIVFNGIRSNS
PQLEKLCSSVNVSNEIKSSGNTMKVIFFTDGSRPYGGFTASY
TSSEDAVCGGSLPNTPEG
NFTSPGYDGVRNYSRNLNCEWTLSNPNQGNSSISIHFEDFYLESHQDCQFDVLEFRVGDA
DGPLMWRLCGPSKPTLPLVIPYSQVWIHFVTNERVEHIGFHAKY
SFTDCGGIQIGDSGVI
TSPNYPNAYDSLTHCSSLLEAPQGHTITLTFSDFDIEPHTTCAWDSVTVRNGGSPESPII
GQYCGNSNPRTIQSGSNQLVVTFNSDHSLQGGGFYATW
NTQTLGCGGIFHSDNGTIRSPH
WPQNFPENSRCSWTAITHKSKHLEISFDNNFLIPSGDGQCQNSFVKVWAGTEEVDKALLA
TGCGNVAPGPVITPSNTFTAVFQSQEAPAQGFSASF
VSRCGSNFTGPSGYIISPNYPKQY
DNNMNCTYVIEANPLSVVLLTFVSFHLEARSAVTGSCVNDGVHIIRGYSVMSTPFATVCG
DEMPAPLTIAGPVLLNFYSNEQITDFGFKFSY
RIISCGGVFNFSSGIITSPAYSYADYPN
DMHCLYTITVSDDKVIELKFSDFDVVPSTSCSHDYLAIYDGANTSDPLLGKFCGSKRPPN
VKSSNNSMLLVFKTDSFQTAKGWKMSF
RQTLGPQQGCGGYLTGSNNTFASPDSDSNGMYD
KNLNCVWIIIAPVNKVIHLTFNTFALEAASTRQRCLYDYVKLYDGDSENANLAGTFCGST
VPAPFISSGNFLTVQFISDLTLEREGFNATY
TIMDMPCGGTYNATWTPQNISSPNSSDPD
VPFSICTWVIDSPPHQQVKITVWALQLTSQDCTQNYLQLQDSPQGHGNSRFQFCGRNASA
VPVFYSSMSTAMVIFKSGVVNRNSRMSFTY
QIADCNRDYHKAFGNLRSPGWPDNYDNDKD
CTVTLTAPQNHTISLFFHSLGIENSVECRNDFLEVRNGSNSNSPLLGKYCGTLLPNPVFS
QNNELYLRFKSDSVTSDRGYEIIW
TSSPSGCGGTLYGDRGSFTSPGYPGTYPNNTYCEWV
LVAPAGRLVTINFYFISIDDPGDCVQNYLTLYDGPNASSPSSGPYCGGDTSIAPFVASSN
QVFIKFHADYARRPSAFRLTW
DS
Sequence length 3623
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Vitamin digestion and absorption   Cobalamin (Cbl, vitamin B12) transport and metabolism
Vitamin D (calciferol) metabolism
Defective AMN causes hereditary megaloblastic anemia 1
Defective CUBN causes hereditary megaloblastic anemia 1
HDL clearance
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia, Megaloblastic, Megaloblastic anemia due to inborn errors of metabolism, Megaloblastic Anemia 1 rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
22574174, 15024727, 10080186, 25349199, 22929189, 21208123, 10887099, 27604308
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
Colonic neoplasms Malignant tumor of colon rs267607789, rs774277300, rs781222233, rs1060502734, rs1060503333, rs1339238483 25990418
Colorectal cancer Colorectal Carcinoma, Adenocarcinoma of large intestine rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
25990418
Unknown
Disease term Disease name Evidence References Source
Imerslund-Grasbeck Syndrome Imerslund-Grasbeck syndrome type 1, Imerslund-Grasbeck syndrome GenCC
Proteinuria proteinuria, chronic benign GenCC
Colorectal Cancer Colorectal Cancer In summary, our data strongly demonstrated that upregulation of GRB7 conferred MEKi resistance in CRC cells with KRAS mutations by mediating RTK signaling through the recruitment of PLK1. GWAS, CBGDA
Gout Gout GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 24533076
Acute Kidney Injury Associate 22574174, 37789254
Albuminuria Associate 19366958, 22574174, 23114252, 24052458, 25644490, 30547231, 31613795, 36926036, 37872228
Anemia Associate 10887099
Anemia Megaloblastic Associate 31438875
Bicuspid Aortic Valve Disease Associate 36071494
Breast Neoplasms Associate 18567755
Carcinogenesis Associate 26959381
Carcinoma Renal Cell Associate 28052770, 28260162, 35373928
Cardiovascular Diseases Associate 24052458