Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
80152
Gene name Gene Name - the full gene name approved by the HGNC.
Centromere protein T
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CENPT
Synonyms (NCBI Gene) Gene synonyms aliases
C16orf56, CENP-T, SSMGA
Disease Acronyms (UniProt) Disease acronyms from UniProt database
SSMGA
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16q22.1
Summary Summary of gene provided in NCBI Entrez Gene.
The centromere is a specialized chromatin domain, present throughout the cell cycle, that acts as a platform on which the transient assembly of the kinetochore occurs during mitosis. All active centromeres are characterized by the presence of long arrays
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1364608764 C>A,T Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT046930 hsa-miR-221-3p CLASH 23622248
MIRT885429 hsa-miR-2355-5p CLIP-seq
MIRT885430 hsa-miR-299-3p CLIP-seq
MIRT885431 hsa-miR-3117-5p CLIP-seq
MIRT885432 hsa-miR-3144-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000278 Process Mitotic cell cycle IBA 21873635
GO:0000278 Process Mitotic cell cycle IMP 21695110
GO:0000775 Component Chromosome, centromeric region IDA 21695110
GO:0000776 Component Kinetochore IDA 21529714
GO:0000778 Component Condensed nuclear chromosome kinetochore IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
611510 25787 ENSG00000102901
Protein
UniProt ID Q96BT3
Protein name Centromere protein T (CENP-T) (Interphase centromere complex protein 22)
Protein function Component of the CENPA-NAC (nucleosome-associated) complex, a complex that plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation. The CENPA-NAC complex recruits the CENPA-CAD (nucleosome distal)
PDB 7QOO , 7R5S , 7XHN , 7XHO , 7YWX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16171 CENP-T_N 1 415 Centromere kinetochore component CENP-T N-terminus Family
PF15511 CENP-T_C 450 553 Centromere kinetochore component CENP-T histone fold Domain
Sequence
Sequence length 561
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
RHO GTPases Activate Formins
Deposition of new CENPA-containing nucleosomes at the centromere
Mitotic Prometaphase
EML4 and NUDC in mitotic spindle formation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Developmental delay Gross motor development delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Mental retardation MENTAL RETARDATION, X-LINKED 3 rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Unknown
Disease term Disease name Evidence References Source
Microcephaly short stature and microcephaly with genital anomalies GenCC
Uterine Fibroids Uterine Fibroids GWAS
Associations from Text Mining
Disease Name Relationship Type References
Scleroderma Systemic Associate 23418382