Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
80025
Gene name Gene Name - the full gene name approved by the HGNC.
Pantothenate kinase 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PANK2
Synonyms (NCBI Gene) Gene synonyms aliases
C20orf48, HARP, HSS, NBIA1, PKAN
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20p13
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein belonging to the pantothenate kinase family and is the only member of that family to be expressed in mitochondria. Pantothenate kinase is a key regulatory enzyme in the biosynthesis of coenzyme A (CoA) in bacteria and mammalian
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28939088 T>C Pathogenic Intron variant, missense variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant, initiator codon variant
rs137852961 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant, 5 prime UTR variant
rs137852962 C>T Pathogenic Coding sequence variant, 5 prime UTR variant, intron variant, non coding transcript variant, missense variant
rs137852963 G>A Pathogenic Coding sequence variant, intron variant, genic downstream transcript variant, non coding transcript variant, missense variant
rs137852964 T>C Pathogenic Coding sequence variant, 5 prime UTR variant, genic downstream transcript variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT049757 hsa-miR-92a-3p CLASH 23622248
MIRT047610 hsa-miR-10a-5p CLASH 23622248
MIRT046370 hsa-miR-23b-3p CLASH 23622248
MIRT041189 hsa-miR-497-5p CLASH 23622248
MIRT039651 hsa-miR-615-3p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
FOXN4 Unknown 20603201
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IMP 30221726
GO:0004594 Function Pantothenate kinase activity IBA
GO:0004594 Function Pantothenate kinase activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606157 15894 ENSG00000125779
Protein
UniProt ID Q9BZ23
Protein name Pantothenate kinase 2, mitochondrial (hPanK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) [Cleaved into: Pantothenate kinase 2, mitochondrial intermediate form (iPanK2); Pantothenate kinase 2, mitochondrial mature form (mPanK2)]
Protein function [Isoform 1]: Mitochondrial isoform that catalyzes the phosphorylation of pantothenate to generate 4'-phosphopantothenate in the first and rate-determining step of coenzyme A (CoA) synthesis (PubMed:15659606, PubMed:16272150, PubMed:17242360, Pub
PDB 5E26
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03630 Fumble 213 565 Fumble Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain (at protein level) (PubMed:15659606, PubMed:17825826). Ubiquitous (PubMed:11479594). Highly expressed in the testis (PubMed:17825826). Expressed in the umbilical vein endothelial cells (HUVEC) (PubMed:30221726).
Sequence
Sequence length 570
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Pantothenate and CoA biosynthesis
Metabolic pathways
Biosynthesis of cofactors
  Coenzyme A biosynthesis
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Dystonia Dystonic disorder rs137852968 N/A
Hypoprebetalipoproteinemia, Acanthocytosis, Retinitis Pigmentosa, And Pallidal Degeneration hypoprebetalipoproteinemia, acanthocytosis, retinitis pigmentosa, and pallidal degeneration rs137852959, rs1057518915, rs753376100 N/A
pigmentary pallidal degeneration Pigmentary pallidal degeneration rs370766524, rs753376100, rs879253712, rs1250997630, rs28939088, rs1555789557, rs544616523, rs137852959, rs1600477446, rs148987163, rs1064794317, rs1568569941, rs754521581, rs766251466, rs1131692166
View all (28 more)
N/A
cone-rod dystrophy Cone-rod dystrophy rs544616523 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Leber Congenital Amaurosis leber congenital amaurosis N/A N/A ClinVar
Pantothenate Kinase-Associated Neurodegeneration pantothenate kinase-associated neurodegeneration N/A N/A GenCC
Prostate cancer Prostate cancer N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abetalipoproteinemia Associate 25915509
Abnormalities Drug Induced Associate 16023068
Aicardi Goutieres syndrome Associate 29642163
Ataxia Associate 28821231
Athetosis Associate 15747360
Basal Ganglia Diseases Associate 18239249, 21769749
Brain Diseases Associate 15659606, 16023068, 36445406
Chorea Associate 28821231
Choreoathetosis Hypothyroidism And Neonatal Respiratory Distress Stimulate 37904482
Coenzyme Q10 Deficiency Associate 22221393, 33952316