Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
79728
Gene name Gene Name - the full gene name approved by the HGNC.
Partner and localizer of BRCA2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PALB2
Synonyms (NCBI Gene) Gene synonyms aliases
BROVCA5, FANCN, PNCA3
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16p12.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that may function in tumor suppression. This protein binds to and colocalizes with the breast cancer 2 early onset protein (BRCA2) in nuclear foci and likely permits the stable intranuclear localization and accumulation of BRCA
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs45439097 C>G,T Conflicting-interpretations-of-pathogenicity, benign-likely-benign, likely-benign Synonymous variant, 3 prime UTR variant, coding sequence variant
rs45476495 C>A,T Pathogenic, likely-pathogenic, uncertain-significance Stop gained, missense variant, coding sequence variant
rs45478192 A>C Uncertain-significance, likely-benign, benign-likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs45494092 A>C,G,T Pathogenic, conflicting-interpretations-of-pathogenicity, benign, benign-likely-benign, uncertain-significance Stop gained, missense variant, coding sequence variant
rs45510998 G>T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT046846 hsa-miR-221-3p CLASH 23622248
MIRT1211685 hsa-miR-299-3p CLIP-seq
MIRT1211686 hsa-miR-3153 CLIP-seq
MIRT1211687 hsa-miR-3924 CLIP-seq
MIRT1211688 hsa-miR-4648 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000724 Process Double-strand break repair via homologous recombination IBA
GO:0000724 Process Double-strand break repair via homologous recombination IDA 19369211, 19423707, 28398198
GO:0000724 Process Double-strand break repair via homologous recombination IEA
GO:0000724 Process Double-strand break repair via homologous recombination IMP 26323318
GO:0001701 Process In utero embryonic development IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
610355 26144 ENSG00000083093
Protein
UniProt ID Q86YC2
Protein name Partner and localizer of BRCA2
Protein function Plays a critical role in homologous recombination repair (HRR) through its ability to recruit BRCA2 and RAD51 to DNA breaks (PubMed:16793542, PubMed:19369211, PubMed:19423707, PubMed:22941656, PubMed:24141787, PubMed:28319063). Strongly stimulat
PDB 2W18 , 3EU7 , 7S4A , 8YAP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16756 PALB2_WD40 834 1184 Partner and localizer of BRCA2 WD40 domain Domain
Sequence
MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ
QDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQR
TDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP
NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST
DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD
TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ
RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK
LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVN
RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL
KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELS
PKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPT
TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG
SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE
TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA
LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL
LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ
GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK
ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW
DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH
YS
Sequence length 1186
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Homologous recombination
Fanconi anemia pathway
  HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Breast Cancer Malignant tumor of breast rs515726060, rs1060502769, rs587782680, rs375699023, rs1555461586, rs869312772, rs587776419, rs180177133, rs886039683, rs587780210, rs180177103, rs1966967065, rs730881868, rs587776527, rs1555457867
View all (21 more)
N/A
Breast Carcinoma breast carcinoma rs1060502759, rs1060502772, rs1555461727 N/A
Fanconi Anemia Fanconi anemia complementation group N rs180177133, rs180177134, rs876658813, rs774949203, rs747148023, rs1060499823, rs587776416, rs515726073, rs730881876, rs180177135, rs730881879, rs587776410, rs786203488, rs118203997, rs180177112
View all (9 more)
N/A
Pancreatic cancer Pancreatic cancer, susceptibility to, 3 rs886039619, rs587776527, rs745533713, rs876659571, rs1555460431, rs587778587, rs118203998, rs587776417, rs864622498 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Anaplastic Ependymoma anaplastic ependymoma N/A N/A ClinVar
Bile Duct Neoplasms Bile duct cancer N/A N/A ClinVar
Bipolar Disorder Bipolar disorder N/A N/A GWAS
Chordoma chordoma N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 31976786, 37452825
Adenocarcinoma Mucinous Associate 34103667
Adenoma Associate 33403473
Adenomatous Polyposis Coli Associate 39519399
Alternating hemiplegia of childhood Associate 28398700
Anemia Hemolytic Associate 24949998, 26990772
Anodontia Associate 33229504
Anophthalmia with pulmonary hypoplasia Associate 31787751, 31976786, 36717525, 37200008
Anxiety Disorders Associate 25390645
Biliary Tract Neoplasms Associate 32012241, 36243179