Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
79633
Gene name Gene Name - the full gene name approved by the HGNC.
FAT atypical cadherin 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
FAT4
Synonyms (NCBI Gene) Gene synonyms aliases
CDHF14, CDHR11, FAT-J, FATJ, HKLLS2, NBLA00548, VMLDS2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HKLLS2, VMLDS2
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q28.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the protocadherin family. This gene may play a role in regulating planar cell polarity (PCP). Studies in mice suggest that loss of PCP signaling may cause cystic kidney disease, and mutations in this gene ha
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs35845544 G>A,C Benign-likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs78040862 T>C Benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs138019311 C>A,T Conflicting-interpretations-of-pathogenicity, benign Missense variant, coding sequence variant, synonymous variant
rs144476127 C>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs144922340 C>G,T Conflicting-interpretations-of-pathogenicity Synonymous variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT021819 hsa-miR-132-3p Microarray 17612493
MIRT989937 hsa-miR-105 CLIP-seq
MIRT989938 hsa-miR-125a-5p CLIP-seq
MIRT989939 hsa-miR-125b CLIP-seq
MIRT989940 hsa-miR-1305 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0003007 Process Heart morphogenesis IEA
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 22153077
GO:0005886 Component Plasma membrane IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
612411 23109 ENSG00000196159
Protein
UniProt ID Q6V0I7
Protein name Protocadherin Fat 4 (hFat4) (Cadherin family member 14) (FAT tumor suppressor homolog 4) (Fat-like cadherin protein FAT-J)
Protein function Cadherins are calcium-dependent cell adhesion proteins. FAT4 plays a role in the maintenance of planar cell polarity as well as in inhibition of YAP1-mediated neuroprogenitor cell proliferation and differentiation (By similarity).
PDB 8EGW , 8EGX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin 140 241 Cadherin domain Domain
PF00028 Cadherin 255 344 Cadherin domain Domain
PF00028 Cadherin 363 466 Cadherin domain Domain
PF00028 Cadherin 480 573 Cadherin domain Domain
PF00028 Cadherin 588 680 Cadherin domain Domain
PF00028 Cadherin 694 784 Cadherin domain Domain
PF00028 Cadherin 798 884 Cadherin domain Domain
PF00028 Cadherin 898 987 Cadherin domain Domain
PF00028 Cadherin 1001 1091 Cadherin domain Domain
PF00028 Cadherin 1105 1201 Cadherin domain Domain
PF00028 Cadherin 1215 1306 Cadherin domain Domain
PF00028 Cadherin 1321 1411 Cadherin domain Domain
PF00028 Cadherin 1427 1520 Cadherin domain Domain
PF00028 Cadherin 1538 1622 Cadherin domain Domain
PF00028 Cadherin 1746 1832 Cadherin domain Domain
PF00028 Cadherin 1846 1935 Cadherin domain Domain
PF00028 Cadherin 1949 2042 Cadherin domain Domain
PF00028 Cadherin 2055 2145 Cadherin domain Domain
PF00028 Cadherin 2159 2250 Cadherin domain Domain
PF00028 Cadherin 2264 2355 Cadherin domain Domain
PF00028 Cadherin 2369 2457 Cadherin domain Domain
PF00028 Cadherin 2471 2558 Cadherin domain Domain
PF00028 Cadherin 2572 2660 Cadherin domain Domain
PF00028 Cadherin 2674 2764 Cadherin domain Domain
PF00028 Cadherin 2777 2863 Cadherin domain Domain
PF00028 Cadherin 2877 2974 Cadherin domain Domain
PF00028 Cadherin 2988 3080 Cadherin domain Domain
PF00028 Cadherin 3094 3185 Cadherin domain Domain
PF00028 Cadherin 3199 3289 Cadherin domain Domain
PF00028 Cadherin 3303 3396 Cadherin domain Domain
PF00028 Cadherin 3409 3501 Cadherin domain Domain
PF00028 Cadherin 3513 3605 Cadherin domain Domain
PF07645 EGF_CA 3862 3898 Calcium-binding EGF domain Domain
PF07645 EGF_CA 3900 3942 Calcium-binding EGF domain Domain
PF12661 hEGF 3947 3965 Human growth factor-like EGF Domain
PF02210 Laminin_G_2 4002 4142 Laminin G domain Domain
PF02210 Laminin_G_2 4250 4374 Laminin G domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Expressed in fetal brain, infant brain, brain tumor and colorectal cancer. {ECO:0000269|PubMed:15003449, ECO:0000269|PubMed:16865240}.
Sequence
MDLAPDRATGRPWLPLHTLSVSQLLRVFWLLSLLPGQAWVHGAEPRQVFQVLEEQPPGTL
VGTIQTRPGFTYRLSESHALFAINSSTGALYTTSTIDRESLPSDVINLVVLSSAPTYPTE
VRVLVRDLNDNAPVFPDPSIVVTFKEDSSSGRQVILDTATDSDIGSNGVDHRSYRIIRGN
EAGRFRLDITLNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTV
Q
DINDNPPVFGSSHYQAGVPEDAVVGSSVLQVAAADADEGTNADIRYRLQDEGTPFQMDP
ETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLL
DVNDNDPVVKFRYFPA
TSRYASVDENAQVGTVVALLTVTDADSPAANGNISVQILGGNEQRHFEVQSSKVPNLSLI
KVASALDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVN
DINDHPPVFSQQVY
RVNLSEEAPPGSYVSGISATDGDSGLNANLRYSIVSGNGLGWFHISEHSGLVTTGSSGGL
DRELASQIVLNISARDQGVHPKVSYAQLVVTLL
DVNDEKPVFSQPEGYDVSVVENAPTGT
ELLMLRATDGDLGDNGTVRFSLQEAETDRRSFRLDPVSGRLSTISSLDREEQAFYSLLVL
ATDLGSPPQSSMARINVSLL
DINDNSPVFYPVQYFAHIKENEPGGSYITTVSATDPDLGT
NGTVKYSISAGDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVT
ITVL
DTQDNPPVFSQVAYSFVVFENVALGYHVGSVSASTMDLNSNISYLITTGDQKGMFA
INQVTGQLTTANVIDREEQSFYQLKVVASGGTVTGDTMVNITVK
DLNDNSPHFLQAIESV
NVVENWQAGHSIFQAKAVDPDEGVNGMVLYSLKQNPKNLFAINEKNGTISLLGPLDVHAG
SYQIEILASDMGVPQLSSSVILTVYVH
DVNDNSPVFDQLSYEVTLSESEPVNSRFFKVQA
SDKDSGANGEIAYTIAEGNTGDAFGIFPDGQLYIKSELDRELQDRYVLMVVASDRAVEPL
SATVNVTVILE
DVNDNRPLFNSTNYTFYFEEEQRAGSFVGKVSAVDKDFGPNGEVRYSFE
MVQPDFELHAISGEITNTHQFDRESLMRRRGTAVFSFTVIATDQGIPQPLKDQATVHVYM
K
DINDNAPKFLKDFYQATISESAANLTQVLRVSASDVDEGNNGLIHYSIIKGNEERQFAI
DSTSGQVTLIGKLDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDIL
DENDNTPSFPKSTL
FVDVLENMRIGELVSSVTATDSDSGDNADLYYSITGTNNHGTFSISPNTGSIFLAKKLDF
ETQSLYKLNITAKDQGRPPRSSTMSVVIHVR
DFNDNPPSFPPGDIFKSIVENIPIGTSVI
SVTAHDPDADINGQLSYTIIQQMPRGNHFTIDEVKGTIYTNAEIDREFANLFELTVKAND
QAVPIETRRYALKNVTILVT
DLNDNVPMFISQNALAADPSAVIGSVLTTIMAADPDEGAN
GEIEYEIINGDTDTFIVDRYSGDLRVASALVPSQLIYNLIVSATDLGPERRKSTTELTII
LQ
GLDGPVFTQPKYITILKEGEPIGTNVISIEAASPRGSEAPVEYYIVSVRCEEKTVGRL
FTIGRHTGIIQTAAILDREQGACLYLVDVYAIEKSTAFPRTQRAEVEITLQDINDNPPVF
PTDMLDLTVEENIGDGSKIMQLTAMDADEGANALVTYTIISGADDSFRIDPESGDLIATR
RLDRERRSKYSLLVRADDGLQSSDMRINITVS
DVNDHTPKFSRPVYSFDIPEDTIPGSLV
AAILATDDDSGVNGEITYIVNEDDEDGIFFLNPITGVFNLTRLLDYEVQQYYILTVRAED
GGGQFTTIRVYFNIL
DVNDNPPIFSLNSYSTSLMENLPVGSTVLVFNVTDADDGINSQLT
YSIASGDSLGQFTVDKNGVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSII
LL
DVNDNPPTFLSPKLTYIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIG
TIDGEVRLTGELDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVL
DINDNNPIFAQALYK
VEINENTLTGTDIIQVFAADGDEGTNGQVRYGIVNGNTNQEFRIDSVTGAITVAKPLDRE
KTPTYHLTVQATDRGSTPRTDTSTVSIVLL
DINDFVPVFELSPYSVNVPENLGTLPRTIL
QVVARDDDRGSNSKLSYVLFGGNEDNAFTLSASGELGVTQSLDRETKERFVLMITATDSG
SPALTGTGTINVIVD
DVNDNVPTFASKAYFTTIPEDAPTGTDVLLVNASDADASKNAVIR
IIGGNSQFTINPSTGQIITSALLDRETKDNYTLVVVCSDAGSPEPLSSSTSVLVTVT
DVN
DNPPRFQHHPYVTHIPSPTLPGSFVFAVTVTDADIGPNSELHYSLSGRNSEKFHIDPLRG
AIMAAGPLNGASEVTFSVHVKDGGSFPKTDSTTVTVRF
VNKADFPKVRAKEQTFMFPENQ
PVSSLVTTITGSSLRGEPMSYYIASGNLGNTFQIDQLTGQVSISQPLDFEKIQKYVVWIE
ARDGGFPPFSSYEKLDITVL
DVNDNAPIFKEDPFISEILENLSPRKILTVSAMDKDSGPN
GQLDYEIVNGNMENSFSINHATGEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVM
INIL
DENDNAPRFSQIFSAHVPENSPLGYTVTRVTTSDEDIGINAISRYSIMDASLPFTI
NPSTGDIVISRPLNREDTDRYRIRVSAHDSGWTVSTDVTIFVT
DINDNAPRFSRTSYYLD
CPELTEIGSKVTQVFATDPDEGSNGQVFYFIKSQSEYFRINATTGEIFNKQILKYQNVTG
FSNVNINRHSFIVTSSDRGKPSLISETTVTINIV
DSNDNAPQFLKSKYFTPVTKNVKVGT
KLIRVTAIDDKDFGLNSEVEYFISNDNHLGKFKLDNDTGWISVASSLISDLNQNFFITVT
AKDKGNPPLSSQATVHITVT
EENYHTPEFSQSHMSATIPESHSIGSIVRTVSARDRDAAM
NGLIKYSISSGNEEGIFAINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSV
TVNVI
DVNDNSPVFLSDDYFPTVLENAPSGTTVIHLNATDADSGTNAVIAYTVQSSDSDL
FVIDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLK
GTNEYVPRFVS
KLYYFEISEAAPKGTIVGEVFASDRDLGTDGEVHYLIFGNSRKKGFQINKKTGQIYVSGI
LDREKEERVSLKVLAKNFGSIRGADIDEVTVNVTVL
DANDPPIFTLNIYSVQISEGVPIG
THVTFVSAFDSDSIPSWSRFSYFIGSGNENGAFSINPQTGQITVTAELDRETLPIYNLSV
LAVDSGTPSATGSASLLVTLE
DINDNGPMLTVSEGEVMENKRPGTLVMTLQSTDPDLPPN
QGPFTYYLLSTGPATSYFSLSTAGVLSTTREIDREQIADFYLSVVTKDSGVPQMSSTGTV
HITVI
DQNDNPSQSRTVEIFVNYYGNLFPGGILGSVKPQDPDVLDSFHCSLTSGVTSLFS
IPGGTCDLNSQPRSTDGTFDLTVLSNDGVHSTVTSNIRVFFAGFSNATVDNSILLRLGVP
TVKDFLTNHYLHFLRIASSQLTGLGTAVQLYSAYEENNRTFLLAAVKRNHNQYVNPSGVA
TFFESIKEILLRQSGVKVESVDHDSCVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVAN
EPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERD
INECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYC
ECNPCFNGGSCQSGVDSY
YCHCP
FGVFGKHCELNSYGFEELSYMEFPSLDPNNNYIYVKFATIKSHALLLYNYDNQTG
DRAEFLALEIAEERLRFSYNLGSGTYKLTTMKKVSDGHFHTVIARRAGMAASLTVDSCSE
NQEPGYCTVSNVAVSDDWTLDVQPNRVTVGGIRSLEPILQRRGHVESHDFVGCIMEFAVN
GR
PLEPSQALAAQGILDQCPRLEGACTRSPCQHGGTCMDYWSWQQCHCKEGLTGKYCEKS
VTPDTALSLEGKGRLDYHMSQNEKREYLLRQSLRGAMLEPFGVNSLEVKFRTRSENGVLI
HIQESSNYTTVKIKNGKVYFTSDAGIAGKVERNIPEVYVADGHWHTFLIGKNGTATVLSV
DRIYNRDIIHPTQDFGGLDVLTISLGGIPPNQAHRDAQTAGFDGCIASMWYGGE
SLPFSG
KHSLASISKTDPSVKIGCRGPNICASNPCWGDLLCINQWYAYRCVPPGDCASHPCQNGGS
CEPGLHSGFTCSCPDSHTGRTCEMVVACLGVLCPQGKVCKAGSPAGHVCVLSQGPEEISL
PLWAVPAIVGSCATVLALLVLSLILCNQCRGKKAKNPKEEKKPKEKKKKGSENVAFDDPD
NIPPYGDDMTVRKQPEGNPKPDIIERENPYLIYDETDIPHNSETIPSAPLASPEQEIEHY
DIDNASSIAPSDADIIQHYKQFRSHTPKFSIQRHSPLGFARQSPMPLGASSLTYQPSYGQ
GLRTSSLSHSACPTPNPLSRHSPAPFSKSSTFYRNSPARELHLPIRDGNTLEMHGDTCQP
GIFNYATRLGRRSKSPQAMASHGSRPGSRLKQPIGQIPLESSPPVGLSIEEVERLNTPRP
RNPSICSADHGRSSSEEDCRRPLSRTRNPADGIPAPESSSDSDSHESFTCSEMEYDREKP
MVYTSRMPKLSQVNESDADDEDNYGARLKPRRYHGRRAEGGPVGTQAAAPGTADNTLPMK
LGQQAGTFNWDNLLNWGPGFGHYVDVFKDLASLPEKAAANEEGKAGTTKPVPKDGEAEQY
V
Sequence length 4981
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Hippo signaling pathway - multiple species  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Adenocarcinoma Adenocarcinoma, Adenocarcinoma, Basal Cell, Adenocarcinoma, Oxyphilic, Adenocarcinoma, Tubular rs121913530, rs886039394, rs121913474 22484628
Agenesis of corpus callosum Agenesis of corpus callosum rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057, rs1384496494, rs1599017933
Carcinoma Carcinoma, Cribriform, Carcinoma, Granular Cell rs121912654, rs555607708, rs786202962, rs1564055259 22484628
Cerebrofacioarticular syndrome Van Maldergem Wetzburger Verloes syndrome, VAN MALDERGEM SYNDROME 2, Cerebrofacioarticular syndrome rs483352917, rs483352918, rs483352919, rs398122953, rs398122954, rs398122955, rs370088878, rs398122956, rs398122957, rs963302668 24056717, 24913602
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Renal hypoplasia Congenital hypoplasia of kidney ClinVar
Cerebrofacioarticular Syndrome van Maldergem syndrome GenCC
Multiple Congenital Anomalies multiple congenital anomalies/dysmorphic syndrome-intellectual disability GenCC
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 22143938, 35212236, 35770846
Breast Neoplasms Inhibit 25679223
Breast Neoplasms Associate 29321622, 33899544, 36051999, 36404592
Carcinogenesis Associate 25679223
Carcinoma Acinar Cell Associate 25743105
Carcinoma Basal Cell Associate 33928395
Carcinoma Embryonal Associate 36713456
Carcinoma Hepatocellular Associate 26672766, 37735184
Carcinoma Hepatocellular Inhibit 31395065
Carcinoma Lobular Associate 27811364