Gene Gene information from NCBI Gene database.
Entrez ID 7862
Gene name Bromodomain and PHD finger containing 1
Gene symbol BRPF1
Synonyms (NCBI Gene)
BR140IDDDFP
Chromosome 3
Chromosome location 3p25.3
Summary This gene encodes a bromodomain, PHD finger and chromo/Tudor-related Pro-Trp-Trp-Pro (PWWP) domain containing protein. The encoded protein is a component of the MOZ/MORF histone acetyltransferase complexes which function as a transcriptional regulators. T
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs762904815 C>-,CC,CCC Pathogenic Intron variant, non coding transcript variant, frameshift variant, coding sequence variant
rs886041090 TG>- Pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
rs1057519509 C>T Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs1057519510 C>T Pathogenic Stop gained, non coding transcript variant, coding sequence variant
rs1057519511 AG>- Pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
160
miRTarBase ID miRNA Experiments Reference
MIRT052041 hsa-let-7b-5p CLASH 23622248
MIRT050786 hsa-miR-17-3p CLASH 23622248
MIRT047074 hsa-miR-183-5p CLASH 23622248
MIRT043564 hsa-miR-331-3p CLASH 23622248
MIRT480714 hsa-miR-3927-3p PAR-CLIP 23592263
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0000123 Component Histone acetyltransferase complex IDA 24065767
GO:0003677 Function DNA binding IEA
GO:0005515 Function Protein binding IPI 25281266, 32296183
GO:0005634 Component Nucleus IDA 18794358, 24065767, 25593309, 27939640
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602410 14255 ENSG00000156983
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P55201
Protein name Peregrin (Bromodomain and PHD finger-containing protein 1) (Protein Br140)
Protein function Scaffold subunit of various histone acetyltransferase (HAT) complexes, such as the MOZ/MORF and HBO1 complexes, which have a histone H3 acetyltransferase activity (PubMed:16387653, PubMed:24065767, PubMed:27939640). Plays a key role in HBO1 comp
PDB 2D9E , 2RS9 , 2X35 , 2X4W , 2X4X , 2X4Y , 3L42 , 3MO8 , 4LC2 , 4QYD , 4QYL , 4UYE , 5C6S , 5C7N , 5C85 , 5C87 , 5C89 , 5D7X , 5DY7 , 5DYA , 5DYC , 5E3D , 5E3G , 5EM3 , 5EPR , 5EPS , 5EQ1 , 5ERC , 5ETB , 5ETD , 5EV9 , 5EVA , 5EWC , 5EWD , 5EWH , 5EWV , 5EWW , 5FFV , 5FFW , 5FFY , 5FG4 , 5FG5 , 5G4R , 5G4S , 5MWG , 5MWH , 5MWZ , 5MYG , 5O4S , 5O4T , 5O55
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10513 EPL1 106 255 Enhancer of polycomb-like Family
PF13831 PHD_2 287 321 Family
PF13832 zf-HC5HC2H_2 328 447 Domain
PF00439 Bromodomain 637 720 Bromodomain Domain
PF00855 PWWP 1083 1200 PWWP domain Domain
Tissue specificity TISSUE SPECIFICITY: High levels in testis. {ECO:0000269|PubMed:7906940}.
Sequence
MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRK
HKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVS
EDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHHNVSASTTPKLPEVV
YRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPI
PQEIFEYLMDRLEKE
SYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAV
HQECYGVPYIPEGQWLCRRCL
QSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEV
CFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLY
MKMEPVRETGANGTSFSVRKTAYCDIH
TPPGSARRLPALSHSEGEEDEDEEEDEGKGWSS
EKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRL
HSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLER
ARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLS
EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVR

LREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEATHHTEDAAEEERLVLLENQKHL
PVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPS
SRGSLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPK
TAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSDSDK
STEDPPMDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSSSAASDRTSTTP
SKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDED
SPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEARE
HLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRS

KVQGEQSSETSDSD
Sequence length 1214
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    HATs acetylate histones
Regulation of TP53 Activity through Acetylation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
142
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
BRPF1-related disorder Pathogenic; Likely pathogenic rs2125500187, rs2471511294, rs2471497955, rs2471469955 RCV004746505
RCV003394451
RCV003393033
RCV003397781
Global developmental delay Pathogenic rs1575155995 RCV001526572
Intellectual developmental disorder with dysmorphic facies and ptosis Likely pathogenic; Pathogenic rs2125489641, rs1367505804, rs2125511510, rs2125501418, rs2125503212, rs2125515297, rs2125500625, rs2125500187, rs2125500524, rs2125507908, rs2125514693, rs2125500407, rs2125504267, rs2471501529, rs759029777
View all (30 more)
RCV001374610
RCV001788504
RCV001784054
RCV001808301
RCV001808849
RCV001808959
RCV001844526
RCV003125979
RCV002249319
RCV002249320
RCV002249321
RCV002272688
RCV002274465
RCV005032217
RCV002472125
RCV003135872
RCV003148282
RCV003149151
RCV000417023
RCV003459022
RCV003493327
RCV003883358
RCV003883391
RCV003991373
RCV004555955
RCV004594902
RCV000416949
RCV000416994
RCV000417031
RCV000416968
RCV000416985
RCV000416973
RCV000417004
RCV000417029
RCV000416965
RCV000576662
RCV000677700
RCV000761594
RCV000767529
RCV000999467
RCV001251695
RCV001251694
RCV001251693
RCV001262817
RCV001264737
Intellectual disability Pathogenic rs886041090, rs2077100499 RCV000258899
RCV001249495
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autistic behavior Uncertain significance rs2077027454 RCV001787701
Developmental disorder Uncertain significance rs2471511096 RCV003127261
Neurodevelopmental delay Uncertain significance rs2077027454 RCV001787701
Uterine corpus endometrial carcinoma Likely benign rs752031512 RCV005930882
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Apraxias Associate 38346666
Articulation Disorders Associate 38346666
Blepharophimosis Associate 27939639, 31020800
Carcinoma Hepatocellular Associate 35822928, 38072045
Death Sudden Associate 32652122
Dental Fissures Associate 31020800
Facial Dysmorphism with Multiple Malformations Associate 31020800, 38346666
Genetic Diseases Inborn Associate 31020800
Immunologic Deficiency Syndromes Associate 27939639
Intellectual Disability Associate 27939639, 31020800, 33157260, 38346666