Gene Gene information from NCBI Gene database.
Entrez ID 7812
Gene name Cold shock domain containing E1
Gene symbol CSDE1
Synonyms (NCBI Gene)
D1S155EUNR
Chromosome 1
Chromosome location 1p13.2
miRNA miRNA information provided by mirtarbase database.
889
miRTarBase ID miRNA Experiments Reference
MIRT019618 hsa-miR-340-5p Sequencing 20371350
MIRT031909 hsa-miR-16-5p Proteomics 18668040
MIRT050445 hsa-miR-23a-3p CLASH 23622248
MIRT049113 hsa-miR-92a-3p CLASH 23622248
MIRT049113 hsa-miR-92a-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0000932 Component P-body IEA
GO:0003676 Function Nucleic acid binding IEA
GO:0003723 Function RNA binding HDA 22658674, 22681889
GO:0003723 Function RNA binding IEA
GO:0003729 Function MRNA binding TAS 36354136
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
191510 29905 ENSG00000009307
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75534
Protein name Cold shock domain-containing protein E1 (N-ras upstream gene protein) (Protein UNR)
Protein function RNA-binding protein involved in translationally coupled mRNA turnover (PubMed:11051545, PubMed:15314026). Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by t
PDB 1WFQ , 1X65 , 2YTV , 2YTX , 2YTY
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00313 CSD 26 90 Domain
PF00313 CSD 186 248 Domain
PF00313 CSD 349 413 Domain
PF00313 CSD 519 582 Domain
PF00313 CSD 674 738 Domain
PF12901 SUZ-C 756 788 SUZ-C motif Domain
Sequence
MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
QDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
KQEILPEERMNGQVVCAVPHNLESKSPAAP
GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
VATDVRLL
PQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKL
PKGTVSF
HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKT
HSVNGITEEADPTIYSGK
VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
VILNQRTGKCSACNVWRV
CEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
NSMGFGAE
RKIRQAGVID
Sequence length 798
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
50
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
CSDE1-associated disorder Likely pathogenic rs1659401492 RCV001254148
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign; Likely benign rs189058114 RCV005906279
Clear cell carcinoma of kidney Benign; Likely benign rs189058114 RCV005906281
Colon adenocarcinoma Benign; Likely benign rs189058114 RCV005906277
CSDE1-associated neurodevelopmental disorder Uncertain significance rs2101002680 RCV002266859
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Aphasia Broca Associate 35026469
Arthritis Rheumatoid Associate 12223111
Autistic Disorder Associate 35026469
Breast Neoplasms Associate 24098497, 35923244
Carcinoma Hepatocellular Associate 36354136
Carcinoma Pancreatic Ductal Associate 28763470
Developmental Disabilities Associate 35026469
Eye Abnormalities Associate 35026469
Intellectual Disability Associate 35026469
Lung Neoplasms Associate 32808651