Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	7643
Gene name	Zinc finger protein 90
Gene symbol	ZNF90
Synonyms (NCBI Gene)	HTF9
Chromosome	19
Chromosome location	19p12

226

Show/Hide all (226)

miRTarBase ID	miRNA	Experiments	Reference
MIRT515166	hsa-miR-200a-5p	PAR-CLIP	23446348
MIRT515165	hsa-miR-200b-5p	PAR-CLIP	23446348
MIRT515164	hsa-miR-4712-5p	PAR-CLIP	23446348
MIRT515163	hsa-miR-770-5p	PAR-CLIP	23446348
MIRT515162	hsa-miR-766-3p	PAR-CLIP	23446348
MIRT515161	hsa-miR-3925-3p	PAR-CLIP	23446348
MIRT515160	hsa-miR-6845-3p	PAR-CLIP	23446348
MIRT515159	hsa-miR-6873-3p	PAR-CLIP	23446348
MIRT515158	hsa-miR-4768-5p	PAR-CLIP	23446348
MIRT515156	hsa-miR-6833-3p	PAR-CLIP	23446348
MIRT515157	hsa-miR-6809-3p	PAR-CLIP	23446348
MIRT444769	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT444768	hsa-miR-526b-5p	PAR-CLIP	22100165
MIRT444766	hsa-miR-4762-3p	PAR-CLIP	22100165
MIRT444767	hsa-miR-578	PAR-CLIP	22100165
MIRT444769	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT444768	hsa-miR-526b-5p	PAR-CLIP	22100165
MIRT444766	hsa-miR-4762-3p	PAR-CLIP	22100165
MIRT444767	hsa-miR-578	PAR-CLIP	22100165
MIRT515166	hsa-miR-200a-5p	PAR-CLIP	23446348
MIRT515165	hsa-miR-200b-5p	PAR-CLIP	23446348
MIRT515164	hsa-miR-4712-5p	PAR-CLIP	23446348
MIRT515163	hsa-miR-770-5p	PAR-CLIP	23446348
MIRT515162	hsa-miR-766-3p	PAR-CLIP	23446348
MIRT515161	hsa-miR-3925-3p	PAR-CLIP	23446348
MIRT515160	hsa-miR-6845-3p	PAR-CLIP	23446348
MIRT515159	hsa-miR-6873-3p	PAR-CLIP	23446348
MIRT515158	hsa-miR-4768-5p	PAR-CLIP	23446348
MIRT515156	hsa-miR-6833-3p	PAR-CLIP	23446348
MIRT515157	hsa-miR-6809-3p	PAR-CLIP	23446348
MIRT444769	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT444768	hsa-miR-526b-5p	PAR-CLIP	22100165
MIRT444766	hsa-miR-4762-3p	PAR-CLIP	22100165
MIRT444767	hsa-miR-578	PAR-CLIP	22100165
MIRT444769	hsa-miR-4766-5p	PAR-CLIP	22100165
MIRT444768	hsa-miR-526b-5p	PAR-CLIP	22100165
MIRT444766	hsa-miR-4762-3p	PAR-CLIP	22100165
MIRT444767	hsa-miR-578	PAR-CLIP	22100165
MIRT1542445	hsa-miR-1202	CLIP-seq
MIRT1542446	hsa-miR-1238	CLIP-seq
MIRT1542447	hsa-miR-1260	CLIP-seq
MIRT1542448	hsa-miR-1260b	CLIP-seq
MIRT1542449	hsa-miR-1285	CLIP-seq
MIRT1542450	hsa-miR-146a	CLIP-seq
MIRT1542451	hsa-miR-146b-5p	CLIP-seq
MIRT1542452	hsa-miR-188-3p	CLIP-seq
MIRT1542453	hsa-miR-25	CLIP-seq
MIRT1542454	hsa-miR-3127-5p	CLIP-seq
MIRT1542455	hsa-miR-3156-3p	CLIP-seq
MIRT1542456	hsa-miR-3187-5p	CLIP-seq
MIRT1542457	hsa-miR-32	CLIP-seq
MIRT1542458	hsa-miR-325	CLIP-seq
MIRT1542459	hsa-miR-338-3p	CLIP-seq
MIRT1542460	hsa-miR-3622b-5p	CLIP-seq
MIRT1542461	hsa-miR-363	CLIP-seq
MIRT1542462	hsa-miR-3650	CLIP-seq
MIRT1542463	hsa-miR-3652	CLIP-seq
MIRT1542464	hsa-miR-367	CLIP-seq
MIRT1542465	hsa-miR-377	CLIP-seq
MIRT1542466	hsa-miR-3945	CLIP-seq
MIRT1542467	hsa-miR-3972	CLIP-seq
MIRT1542468	hsa-miR-412	CLIP-seq
MIRT1542469	hsa-miR-4253	CLIP-seq
MIRT1542470	hsa-miR-4266	CLIP-seq
MIRT1542471	hsa-miR-4307	CLIP-seq
MIRT1542472	hsa-miR-4310	CLIP-seq
MIRT1542473	hsa-miR-4325	CLIP-seq
MIRT1542474	hsa-miR-4430	CLIP-seq
MIRT1542475	hsa-miR-4446-5p	CLIP-seq
MIRT1542476	hsa-miR-4468	CLIP-seq
MIRT1542477	hsa-miR-4474-3p	CLIP-seq
MIRT1542478	hsa-miR-4477a	CLIP-seq
MIRT1542479	hsa-miR-4505	CLIP-seq
MIRT1542480	hsa-miR-4695-5p	CLIP-seq
MIRT1542481	hsa-miR-4698	CLIP-seq
MIRT1542482	hsa-miR-4756-3p	CLIP-seq
MIRT1542483	hsa-miR-4761-5p	CLIP-seq
MIRT1542484	hsa-miR-4776-3p	CLIP-seq
MIRT1542485	hsa-miR-4779	CLIP-seq
MIRT1542486	hsa-miR-490-5p	CLIP-seq
MIRT1542487	hsa-miR-561	CLIP-seq
MIRT1542488	hsa-miR-589	CLIP-seq
MIRT1542489	hsa-miR-612	CLIP-seq
MIRT1542490	hsa-miR-628-3p	CLIP-seq
MIRT1542491	hsa-miR-651	CLIP-seq
MIRT1542492	hsa-miR-766	CLIP-seq
MIRT1542493	hsa-miR-92a	CLIP-seq
MIRT1542494	hsa-miR-92b	CLIP-seq
MIRT2163657	hsa-miR-1264	CLIP-seq
MIRT2163658	hsa-miR-142-5p	CLIP-seq
MIRT1542452	hsa-miR-188-3p	CLIP-seq
MIRT2163659	hsa-miR-23a	CLIP-seq
MIRT2163660	hsa-miR-23b	CLIP-seq
MIRT2163661	hsa-miR-23c	CLIP-seq
MIRT2163662	hsa-miR-296-3p	CLIP-seq
MIRT1542459	hsa-miR-338-3p	CLIP-seq
MIRT2163663	hsa-miR-340	CLIP-seq
MIRT2163664	hsa-miR-3662	CLIP-seq
MIRT1542465	hsa-miR-377	CLIP-seq
MIRT1542468	hsa-miR-412	CLIP-seq
MIRT1542470	hsa-miR-4266	CLIP-seq
MIRT1542471	hsa-miR-4307	CLIP-seq
MIRT2163665	hsa-miR-431	CLIP-seq
MIRT1542472	hsa-miR-4310	CLIP-seq
MIRT1542478	hsa-miR-4477a	CLIP-seq
MIRT2163666	hsa-miR-4484	CLIP-seq
MIRT1542480	hsa-miR-4695-5p	CLIP-seq
MIRT2163667	hsa-miR-4778-3p	CLIP-seq
MIRT1542485	hsa-miR-4779	CLIP-seq
MIRT2163668	hsa-miR-548an	CLIP-seq
MIRT1542491	hsa-miR-651	CLIP-seq
MIRT1542492	hsa-miR-766	CLIP-seq
MIRT2163669	hsa-miR-943	CLIP-seq
MIRT2382859	hsa-miR-1183	CLIP-seq
MIRT2382860	hsa-miR-1224-5p	CLIP-seq
MIRT2382861	hsa-miR-1228	CLIP-seq
MIRT1542449	hsa-miR-1285	CLIP-seq
MIRT2382862	hsa-miR-132	CLIP-seq
MIRT1542450	hsa-miR-146a	CLIP-seq
MIRT1542451	hsa-miR-146b-5p	CLIP-seq
MIRT2382863	hsa-miR-212	CLIP-seq
MIRT2163659	hsa-miR-23a	CLIP-seq
MIRT2163660	hsa-miR-23b	CLIP-seq
MIRT2163661	hsa-miR-23c	CLIP-seq
MIRT1542453	hsa-miR-25	CLIP-seq
MIRT2163662	hsa-miR-296-3p	CLIP-seq
MIRT2382864	hsa-miR-3145-3p	CLIP-seq
MIRT1542456	hsa-miR-3187-5p	CLIP-seq
MIRT1542457	hsa-miR-32	CLIP-seq
MIRT1542459	hsa-miR-338-3p	CLIP-seq
MIRT2382865	hsa-miR-3607-3p	CLIP-seq
MIRT1542460	hsa-miR-3622b-5p	CLIP-seq
MIRT1542461	hsa-miR-363	CLIP-seq
MIRT1542463	hsa-miR-3652	CLIP-seq
MIRT2163664	hsa-miR-3662	CLIP-seq
MIRT1542464	hsa-miR-367	CLIP-seq
MIRT1542465	hsa-miR-377	CLIP-seq
MIRT2382866	hsa-miR-3915	CLIP-seq
MIRT2382867	hsa-miR-3921	CLIP-seq
MIRT2382868	hsa-miR-3928	CLIP-seq
MIRT1542466	hsa-miR-3945	CLIP-seq
MIRT1542468	hsa-miR-412	CLIP-seq
MIRT1542469	hsa-miR-4253	CLIP-seq
MIRT1542470	hsa-miR-4266	CLIP-seq
MIRT2382869	hsa-miR-4282	CLIP-seq
MIRT1542471	hsa-miR-4307	CLIP-seq
MIRT1542472	hsa-miR-4310	CLIP-seq
MIRT1542473	hsa-miR-4325	CLIP-seq
MIRT1542474	hsa-miR-4430	CLIP-seq
MIRT1542477	hsa-miR-4474-3p	CLIP-seq
MIRT1542478	hsa-miR-4477a	CLIP-seq
MIRT2163666	hsa-miR-4484	CLIP-seq
MIRT1542479	hsa-miR-4505	CLIP-seq
MIRT2382870	hsa-miR-4653-5p	CLIP-seq
MIRT2382871	hsa-miR-4689	CLIP-seq
MIRT1542480	hsa-miR-4695-5p	CLIP-seq
MIRT2382872	hsa-miR-4699-3p	CLIP-seq
MIRT2382873	hsa-miR-4709-5p	CLIP-seq
MIRT2382874	hsa-miR-4729	CLIP-seq
MIRT1542483	hsa-miR-4761-5p	CLIP-seq
MIRT2163667	hsa-miR-4778-3p	CLIP-seq
MIRT1542485	hsa-miR-4779	CLIP-seq
MIRT1542486	hsa-miR-490-5p	CLIP-seq
MIRT2382875	hsa-miR-5096	CLIP-seq
MIRT2163668	hsa-miR-548an	CLIP-seq
MIRT2382876	hsa-miR-580	CLIP-seq
MIRT1542488	hsa-miR-589	CLIP-seq
MIRT1542489	hsa-miR-612	CLIP-seq
MIRT1542491	hsa-miR-651	CLIP-seq
MIRT1542492	hsa-miR-766	CLIP-seq
MIRT1542493	hsa-miR-92a	CLIP-seq
MIRT1542494	hsa-miR-92b	CLIP-seq
MIRT2163669	hsa-miR-943	CLIP-seq
MIRT2163657	hsa-miR-1264	CLIP-seq
MIRT2163658	hsa-miR-142-5p	CLIP-seq
MIRT1542459	hsa-miR-338-3p	CLIP-seq
MIRT2163663	hsa-miR-340	CLIP-seq
MIRT1542470	hsa-miR-4266	CLIP-seq
MIRT1542471	hsa-miR-4307	CLIP-seq
MIRT2163665	hsa-miR-431	CLIP-seq
MIRT1542472	hsa-miR-4310	CLIP-seq
MIRT1542480	hsa-miR-4695-5p	CLIP-seq
MIRT1542485	hsa-miR-4779	CLIP-seq
MIRT1542491	hsa-miR-651	CLIP-seq
MIRT1542492	hsa-miR-766	CLIP-seq
MIRT2163669	hsa-miR-943	CLIP-seq
MIRT2464744	hsa-miR-10a	CLIP-seq
MIRT2464745	hsa-miR-10b	CLIP-seq
MIRT2464746	hsa-miR-339-5p	CLIP-seq
MIRT2464747	hsa-miR-4259	CLIP-seq
MIRT2464748	hsa-miR-4421	CLIP-seq
MIRT2464749	hsa-miR-4684-5p	CLIP-seq
MIRT2464750	hsa-miR-4715-5p	CLIP-seq
MIRT2464751	hsa-miR-593	CLIP-seq
MIRT2464744	hsa-miR-10a	CLIP-seq
MIRT2464745	hsa-miR-10b	CLIP-seq
MIRT2673483	hsa-miR-1914	CLIP-seq
MIRT2673484	hsa-miR-3074-5p	CLIP-seq
MIRT2673485	hsa-miR-3124-3p	CLIP-seq
MIRT2464746	hsa-miR-339-5p	CLIP-seq
MIRT2464747	hsa-miR-4259	CLIP-seq
MIRT2464748	hsa-miR-4421	CLIP-seq
MIRT2673486	hsa-miR-4661-5p	CLIP-seq
MIRT2464749	hsa-miR-4684-5p	CLIP-seq
MIRT2464750	hsa-miR-4715-5p	CLIP-seq
MIRT2464751	hsa-miR-593	CLIP-seq
MIRT2464744	hsa-miR-10a	CLIP-seq
MIRT2464745	hsa-miR-10b	CLIP-seq
MIRT2673483	hsa-miR-1914	CLIP-seq
MIRT2673484	hsa-miR-3074-5p	CLIP-seq
MIRT2673485	hsa-miR-3124-3p	CLIP-seq
MIRT2696407	hsa-miR-3147	CLIP-seq
MIRT1542459	hsa-miR-338-3p	CLIP-seq
MIRT2464746	hsa-miR-339-5p	CLIP-seq
MIRT2464747	hsa-miR-4259	CLIP-seq
MIRT1542470	hsa-miR-4266	CLIP-seq
MIRT1542472	hsa-miR-4310	CLIP-seq
MIRT2464748	hsa-miR-4421	CLIP-seq
MIRT2673486	hsa-miR-4661-5p	CLIP-seq
MIRT2464749	hsa-miR-4684-5p	CLIP-seq
MIRT1542480	hsa-miR-4695-5p	CLIP-seq
MIRT2464750	hsa-miR-4715-5p	CLIP-seq
MIRT1542485	hsa-miR-4779	CLIP-seq
MIRT2464751	hsa-miR-593	CLIP-seq
MIRT1542491	hsa-miR-651	CLIP-seq
MIRT2163669	hsa-miR-943	CLIP-seq

Show/Hide all (11)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0003677	Function	DNA binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	NAS	2023909
GO:0005634	Component	Nucleus	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	IBA
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IEA
GO:0008270	Function	Zinc ion binding	IEA
GO:0008270	Function	Zinc ion binding	NAS	2023909
GO:0046872	Function	Metal ion binding	IEA

MIM	HGNC	e!Ensembl
603973	13165	ENSG00000213988

Q03938

Protein name

Zinc finger protein 90 (Zinc finger protein HTF9)

Protein function

May be involved in transcriptional regulation.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01352	KRAB	3 → 44	KRAB box	Family
PF00096	zf-C2H2	173 → 195	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	201 → 223	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	229 → 251	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	257 → 279	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	313 → 335	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	341 → 363	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	369 → 391	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	397 → 419	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	425 → 447	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	453 → 475	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	481 → 503	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	509 → 531	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	537 → 559	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	565 → 587	Zinc finger, C2H2 type	Domain

Sequence

MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
AFNQSSTLATHKKIHTGEITCKCEECGKAFNRSSHLTSHKRIHTGEKRYKCEDCGKELKY
SSTLTAHKRIHTGEKRYKCEDCGKELKYSSTLTAHKRIHTGEKPYKCDKCGRAFISSSIL
YVHKISHTEEKPYKCEECGKAFKLSSILSTHKRIHTGEKPYKCEECGKAFRRSLVLRTHK
RIHTGEKPYKCDKCGKAFISSSLLYKHKISHSEKKPYKCEECGKAFKRSSTLTIHKISHT
EEKPYKCQECDKVFKRSSALSTHKIIHSGEKPYKCEECGKAFKRSSNLTTHKISHTEEKL
YKCQECDKAFKYSSALSTHKIIHSGENPYKCEECGKAFKRSSVLSKHKIIHTGAKPYKCE
ECGKAFKRSSQLTSHKISHTGEKPYKCEECGKAFNLSSDLNTHKRIHIGQKAYIVKNMAN
L

Sequence length

601

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (1)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
LATE-ONSET ALZHEIMER'S DISEASE	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (2)

Disease Name	Relationship Type	References	Evidence Score
Associations from Text MiningDisease associations identified through Pubtator
Adenocarcinoma of Lung	Associate	37335089	★★★★★ ★☆☆☆☆ Found in Text Mining only
Glioma	Associate	35285582	★★★★★ ★☆☆☆☆ Found in Text Mining only

ZNF90 (zinc finger protein 90)