Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7520
Gene name Gene Name - the full gene name approved by the HGNC.
X-ray repair cross complementing 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
XRCC5
Synonyms (NCBI Gene) Gene synonyms aliases
KARP-1, KARP1, KU80, KUB2, Ku86, NFIV
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q35
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is the 80-kilodalton subunit of the Ku heterodimer protein which is also known as ATP-dependant DNA helicase II or DNA repair protein XRCC5. Ku is the DNA-binding component of the DNA-dependent protein kinase, and it funct
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT050041 hsa-miR-26b-5p CLASH 23622248
MIRT048471 hsa-miR-100-5p CLASH 23622248
MIRT047762 hsa-miR-7-5p CLASH 23622248
MIRT043483 hsa-miR-331-3p CLASH 23622248
MIRT042031 hsa-miR-484 CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000723 Process Telomere maintenance IBA 21873635
GO:0000781 Component Chromosome, telomeric region HDA 19135898
GO:0000781 Component Chromosome, telomeric region IDA 10535943
GO:0000783 Component Nuclear telomere cap complex TAS 15100233
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding IDA 18809223
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
194364 12833 ENSG00000079246
Protein
UniProt ID P13010
Protein name X-ray repair cross-complementing protein 5 (EC 3.6.4.-) (86 kDa subunit of Ku antigen) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit) (CTC box-binding factor 85 kDa subunit) (CTC85) (CTCBF) (DNA repair protein XRCC
Protein function Single-stranded DNA-dependent ATP-dependent helicase that plays a key role in DNA non-homologous end joining (NHEJ) by recruiting DNA-PK to DNA (PubMed:11493912, PubMed:12145306, PubMed:7957065, PubMed:8621488). Required for double-strand break
PDB 1JEQ , 1JEY , 1Q2Z , 1RW2 , 3RZ9 , 5Y3R , 6ERF , 6ERG , 6ERH , 6ZH6 , 6ZHA , 6ZHE , 7AXZ , 7K0Y , 7K17 , 7K1J , 7K1K , 7K1N , 7LSY , 7LT3 , 7NFC , 7NFE , 7SGL , 7SU3 , 7SUD , 7Z6O , 7Z87 , 7Z88 , 7ZT6 , 7ZVT , 7ZWA , 7ZYG , 8AG4 , 8AG5 , 8ASC , 8BH3 , 8BHV , 8BHY , 8BOT , 8EZA , 8EZB , 8RD4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03731 Ku_N 9 244 Ku70/Ku80 N-terminal alpha/beta domain Domain
PF02735 Ku 253 453 Ku70/Ku80 beta-barrel domain Domain
PF03730 Ku_C 476 569 Ku70/Ku80 C-terminal arm Family
PF08785 Ku_PK_bind 593 706 Ku C terminal domain like Domain
Sequence
Sequence length 732
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Non-homologous end-joining   2-LTR circle formation
Cytosolic sensors of pathogen-associated DNA
IRF3-mediated induction of type I IFN
Nonhomologous End-Joining (NHEJ)
Neutrophil degranulation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Lung adenocarcinoma Adenocarcinoma of lung (disorder) rs28934576, rs121913530, rs397516975, rs587776805, rs121913469, rs121913364, rs121913351, rs121913366, rs397516896, rs397516977, rs397516981, rs397517127, rs121913344, rs727504233, rs121913370
View all (5 more)
27602772
Associations from Text Mining
Disease Name Relationship Type References
Acquired Immunodeficiency Syndrome Associate 36312587
Adenocarcinoma of Lung Associate 23181744, 28399858, 34486486
Adenomatous Polyposis Coli Associate 39519399
Arthritis Rheumatoid Associate 36835215
Astrocytoma Associate 27852033
Ataxia Telangiectasia Associate 9636207
Breast Neoplasms Associate 10823943, 20044645, 24062231, 25501155, 29133620, 32501811, 33734613, 37429610
Carcinogenesis Associate 12324457, 18403903, 26918347
Carcinoma Basal Cell Associate 16497868
Carcinoma Hepatocellular Associate 21410269, 24020493, 30897324, 31599408, 32258128, 35903292