Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7498
Gene name Gene Name - the full gene name approved by the HGNC.
Xanthine dehydrogenase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
XDH
Synonyms (NCBI Gene) Gene synonyms aliases
XAN1, XO, XOR
Disease Acronyms (UniProt) Disease acronyms from UniProt database
XAN1
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2p23.1
Summary Summary of gene provided in NCBI Entrez Gene.
Xanthine dehydrogenase belongs to the group of molybdenum-containing hydroxylases involved in the oxidative metabolism of purines. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct f
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs72549369 G>A Pathogenic Coding sequence variant, missense variant
rs119460972 G>A,C,T Pathogenic Synonymous variant, stop gained, coding sequence variant, missense variant
rs148412639 C>G,T Likely-pathogenic, conflicting-interpretations-of-pathogenicity Splice donor variant
rs376882470 C>G,T Likely-pathogenic Splice donor variant
rs760186813 T>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT028928 hsa-miR-26b-5p Microarray 19088304
MIRT756459 hsa-miR-199a-5p Luciferase reporter assay, qRT-PCR 36920714
MIRT1495289 hsa-miR-103b CLIP-seq
MIRT1495290 hsa-miR-1178 CLIP-seq
MIRT1495291 hsa-miR-1184 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001933 Process Negative regulation of protein phosphorylation IDA 18386220
GO:0001937 Process Negative regulation of endothelial cell proliferation IDA 18386220
GO:0004854 Function Xanthine dehydrogenase activity IBA 21873635
GO:0004854 Function Xanthine dehydrogenase activity IDA 8670112
GO:0004855 Function Xanthine oxidase activity IDA 8670112, 17301077
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
607633 12805 ENSG00000158125
Protein
UniProt ID P47989
Protein name Xanthine dehydrogenase/oxidase [Includes: Xanthine dehydrogenase (XD) (EC 1.17.1.4); Xanthine oxidase (XO) (EC 1.17.3.2) (Xanthine oxidoreductase) (XOR)]
Protein function Key enzyme in purine degradation. Catalyzes the oxidation of hypoxanthine to xanthine. Catalyzes the oxidation of xanthine to uric acid. Contributes to the generation of reactive oxygen species. Has also low oxidase activity towards aldehydes (i
PDB 2CKJ , 2E1Q
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00111 Fer2 8 78 2Fe-2S iron-sulfur cluster binding domain Domain
PF01799 Fer2_2 87 161 [2Fe-2S] binding domain Domain
PF00941 FAD_binding_5 228 412 FAD binding domain in molybdopterin dehydrogenase Family
PF03450 CO_deh_flav_C 419 523 CO dehydrogenase flavoprotein C-terminal domain Domain
PF01315 Ald_Xan_dh_C 588 694 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Domain
PF02738 Ald_Xan_dh_C2 699 1237 Molybdopterin-binding domain of aldehyde dehydrogenase Family
Tissue specificity TISSUE SPECIFICITY: Detected in milk (at protein level). {ECO:0000269|Ref.12}.
Sequence
MTADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDR
LQNKIVHFSANACLAPIC
SLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI
VMSMYTLLRNQPEPTMEEIENAFQGNLCRCTGYRPILQGFR
TFARDGGCCGGDGNNPNCC
MNQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQLRFEGERVTWIQAS
TLKELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPMIVCPAWIPELNSVEHGPDGISFG
AACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWFAGKQVKSVASVGGNIITASPISD
LNPVFMASGAKLTLVSRGTRRTVQMDHTFFPGYRKTLLSPEEILLSIEIPYS
REGEYFSA
FKQASRREDDIAKVTSGMRVLFKPGTTEVQELALCYGGMANRTISALKTTQRQLSKLWKE
ELLQDVCAGLAEELHLPPDAPGGMVDFRCTLTLSFFFKFYLTV
LQKLGQENLEDKCGKLD
PTFASATLLFQKDPPADVQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRY
ENELSLRLVTSTRAHAKIKSIDTSEAKKVPGFVCFISADDVPGSNITGICNDETVFAKDK
VTCVGHIIGAVVADTPEHTQRAAQGVKITYEELP
AIITIEDAIKNNSFYGPELKIEKGDL
KKGFSEADNVVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKM
LGVPANRIVVRVKRMGGGFGGKETRSTVVSTAVALAAYKTGRPVRCMLDRDEDMLITGGR
HPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTGR
LCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQKL
EGFTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGA
LLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIYISETSTNTVPNTSPTAA
SVSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTVSLSATGFYRTPNLG
YSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAF
VQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIP
IEFRVSLLRDCPNKKAIYASKAV
GEPPLFLAASIFFAIKDAIRAARAQHTGNNVKELFRLDSPATPEKIRNACVDKFTTLCVT
GVPENCKPWSVRV
Sequence length 1333
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Purine metabolism
Caffeine metabolism
Drug metabolism - other enzymes
Metabolic pathways
Nucleotide metabolism
Peroxisome
  Purine catabolism
Butyrophilin (BTN) family interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Autism Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
15205966
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
Carcinoma Carcinoma, Carcinoma, Spindle-Cell, Undifferentiated carcinoma rs121912654, rs555607708, rs786202962, rs1564055259 12376462
Myopathy Myopathy rs137854521, rs386834236, rs121908557, rs121909092, rs111033570, rs104894299, rs104894294, rs121909273, rs121909274, rs121909275, rs199474699, rs199476140, rs118192165, rs118192169, rs118192166
View all (81 more)
Unknown
Disease term Disease name Evidence References Source
Congestive heart failure Congestive heart failure 19933411 ClinVar
Heart failure Heart failure, Left-Sided Heart Failure, Heart Failure, Right-Sided 19933411 ClinVar
Mental depression Major Depressive Disorder 20471444 ClinVar
Myocardial infarction Myocardial Failure 19933411 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 22678977, 36778128
Alcoholism Stimulate 28839105
Aneuploidy Associate 16935971
Breast Neoplasms Associate 16935971, 23443115, 25416100
Carcinoma Renal Cell Associate 35693733
Cardiovascular Abnormalities Associate 37415141
Cerebral Infarction Associate 38228698
Cerebrovascular Disorders Associate 19175688
Colonic Neoplasms Associate 34564978
Diabetes Mellitus Stimulate 19175688