Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7486
Gene name Gene Name - the full gene name approved by the HGNC.
WRN RecQ like helicase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
WRN
Synonyms (NCBI Gene) Gene synonyms aliases
RECQ3, RECQL2, RECQL3
Chromosome Chromosome number
8
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8p12
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the RecQ subfamily of DNA helicase proteins. The encoded nuclear protein is important in the maintenance of genome stability and plays a role in DNA repair, replication, transcription and telomere maintenance. This protein co
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs4987238 G>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance Genic upstream transcript variant, missense variant, non coding transcript variant, coding sequence variant
rs17847577 C>T Likely-pathogenic, pathogenic Coding sequence variant, stop gained, non coding transcript variant, genic upstream transcript variant
rs34084741 G>A Not-provided, conflicting-interpretations-of-pathogenicity 5 prime UTR variant, non coding transcript variant, genic upstream transcript variant, coding sequence variant, missense variant
rs34477820 A>G Benign, uncertain-significance, conflicting-interpretations-of-pathogenicity 5 prime UTR variant, non coding transcript variant, genic upstream transcript variant, coding sequence variant, missense variant
rs78488552 C>G Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT723949 hsa-miR-5003-3p HITS-CLIP 19536157
MIRT723948 hsa-miR-3928-3p HITS-CLIP 19536157
MIRT490221 hsa-miR-766-5p HITS-CLIP 19536157
MIRT723947 hsa-miR-7154-3p HITS-CLIP 19536157
MIRT490220 hsa-miR-765 HITS-CLIP 19536157
Transcription factors
Transcription factor Regulation Reference
MYC Activation 12842909
RB1 Unknown 11896071
SIRT1 Repression 17996922
SP1 Unknown 11896071
TP53 Repression 11427532
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000287 Function Magnesium ion binding IDA 16622405
GO:0000400 Function Four-way junction DNA binding IDA 11735402
GO:0000403 Function Y-form DNA binding IDA 11735402, 17715146, 26420422
GO:0000405 Function Bubble DNA binding IDA 11433031, 11735402
GO:0000723 Process Telomere maintenance IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604611 12791 ENSG00000165392
Protein
UniProt ID Q14191
Protein name Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN (DNA helicase, RecQ-like type 3) (RecQ protein-like 2) (Werner syndrome protein) [Includes: 3'-5' exonuclease (EC 3.1.-.-); ATP-dependent helicase (EC 5.6.2.4) (DNA 3'-5' helicase WRN)]
Protein function Multifunctional enzyme that has magnesium and ATP-dependent 3'-5' DNA-helicase activity on partially duplex substrates (PubMed:9224595, PubMed:9288107, PubMed:9611231). Also has 3'->5' exonuclease activity towards double-stranded (ds)DNA with a
PDB 2AXL , 2DGZ , 2E1E , 2E1F , 2FBT , 2FBV , 2FBX , 2FBY , 2FC0 , 3AAF , 6TYV , 6YHR , 7GQS , 7GQT , 7GQU , 7XUT , 8PFL , 8PFO , 8PFP , 8YLE
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01612 DNA_pol_A_exo1 57 230 Domain
PF00270 DEAD 550 713 DEAD/DEAH box helicase Domain
PF00271 Helicase_C 748 859 Helicase conserved C-terminal domain Family
PF16124 RecQ_Zn_bind 870 940 RecQ zinc-binding Domain
PF09382 RQC 953 1066 RQC domain Domain
PF00570 HRDC 1153 1219 HRDC domain Domain
PF14493 HTH_40 1258 1352 Helix-turn-helix domain Domain
Sequence
MSEKKLETTAQQRKCPEWMNVQNKRCAVEERKACVRKSVFEDDLPFLEFTGSIVYSYDAS
DCSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVF
PQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKCTETWSLNSL
VKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEIL
DDTVQRFAIN
KEEEILLSDMNKQLTSISEEVMDLAKHLPHAFSKLENPRRVSILLKDISENLYSLRRMII
GSTNIETELRPSNNLNLLSFEDSTTGGVQQKQIREHEVLIHVEDETWDPTLDHLAKHDGE
DVLGNKVERKEDGFEDGVEDNKLKENMERACLMSLDITEHELQILEQQSQEEYLSDIAYK
STEHLSPNDNENDTSYVIESDEDLEMEMLKHLSPNDNENDTSYVIESDEDLEMEMLKSLE
NLNSGTVEPTHSKCLKMERNLGLPTKEEEEDDENEANEGEEDDDKDFLWPAPNEEQVTCL
KMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLIS
LMEDQVLQLKMSNIPACFLGSAQSENVLTDIKLGKYRIVYVTPEYCSGNMGLLQQLEADI
GITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIRED
IVRCLNL
RNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQV
TGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYG
APKDMESYYQEIGRAGRDG
LQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKME
KYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCR
SRLDHCYSMDDSEDTSWDFG
PQAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSR
QLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSLILQAN
EELCPKKLLLPSSK
TVSSGTKEHCYNQVPVELSTEKKSNLEKLYSYKPCDKISSGSNISKKSIMVQSPEKAYSS
SQPVISAQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR
IDGVSEGKAAMLAPLLEVI
KHFCQTNSVQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMA
ITYSLFQEKKMPLKSIAESRILPLMTIGMHLSQAVKAGCPLDLERAGLTPEVQKIIADVI
RNPPVNSDMSKISLIRMLVPENIDTYLIHMAI
EILKHGPDSGLQPSCDVNKRRCFPGSEE
ICSSSKRSKEEVGINTETSSAERKRRLPVWFAKGSDTSKKLMDKTKRGGLFS
Sequence length 1432
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Processive synthesis on the C-strand of the telomere
Removal of the Flap Intermediate from the C-strand
SUMOylation of DNA damage response and repair proteins
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
Carcinoma Squamous cell carcinoma rs121912654, rs555607708, rs786202962, rs1564055259
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Chondrocalcinosis Calcium pyrophosphate deposition disease rs121908405, rs28939080, rs121908407, rs2126640512, rs121908408, rs121908409, rs121908410
Unknown
Disease term Disease name Evidence References Source
Atherosclerosis Atherosclerosis ClinVar
Congestive heart failure Congestive heart failure ClinVar
Myocardial infarction Myocardial Infarction ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Abortion Habitual Associate 23849162
Acute Retroviral Syndrome Associate 17317667
Adenocarcinoma Mucinous Associate 18084250
Adenocarcinoma of Lung Associate 21151896
Adenomatous Polyposis Coli Associate 39519399
Aging Premature Associate 15026416, 17317667, 17717003, 18398454, 20447876, 20451470, 21107010, 21220316, 22351772, 22713343, 23257959, 23650516, 26455304, 26690424, 27672210
View all (1 more)
Alternating hemiplegia of childhood Associate 24709898
Alzheimer Disease Associate 26394601
Ataxia Associate 18596239
Ataxia Telangiectasia Associate 18209099, 23867477