Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7407
Gene name Gene Name - the full gene name approved by the HGNC.
Valyl-tRNA synthetase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
VARS1
Synonyms (NCBI Gene) Gene synonyms aliases
G7A, NDMSCA, VARS, VARS2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
NDMSCA
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6p21.33
Summary Summary of gene provided in NCBI Entrez Gene.
Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, aminoacyl-tRNA synthetases are thought to be among the first prot
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs149378938 G>A,C Likely-pathogenic Genic downstream transcript variant, coding sequence variant, missense variant
rs150882285 C>A,T Likely-pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs376864621 C>T Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs747824231 C>G,T Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs749228986 G>A Uncertain-significance, pathogenic Missense variant, 5 prime UTR variant, coding sequence variant, non coding transcript variant
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002161 Function Aminoacyl-tRNA editing activity IEA
GO:0004832 Function Valine-tRNA ligase activity IBA 21873635
GO:0004832 Function Valine-tRNA ligase activity IDA 8428657
GO:0004832 Function Valine-tRNA ligase activity TAS
GO:0005515 Function Protein binding IPI 24965446, 25416956, 32296183
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
192150 12651 ENSG00000204394
Protein
UniProt ID P26640
Protein name Valine--tRNA ligase (EC 6.1.1.9) (Protein G7a) (Valyl-tRNA synthetase) (ValRS)
Protein function Catalyzes the attachment of valine to tRNA(Val).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00043 GST_C 97 198 Glutathione S-transferase, C-terminal domain Domain
PF00133 tRNA-synt_1 308 939 tRNA synthetases class I (I, L, M and V) Family
PF08264 Anticodon_1 984 1139 Anticodon-binding domain of tRNA ligase Domain
Sequence
MSTLYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPAL
EQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPALG
LRSSAQDPQAVLGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLDPPA
RRIWNNVTRWFVTCVRQP
EFRAVLGEVVLYSGARPLSHQPGPEAPALPKTAAQLKKEAKK
REKLEKFQQKQKIQQQQPPPGEKKPKPEKREKRDPGVITYDLPTPPGEKKDVSGPMPDSY
SPRYVEAAWYPWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPNVTGSLHLGHALTNAI
QDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQGLSRHQLGREAFLQEVWKWK
EEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSAAVTEAFVRLHEEGIIYRSTRLVNWSCT
LNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIET
MLGDVAVAVHPKDTRYQHLKGKNVIHPFLSRSLPIVFDEFVDMDFGTGAVKITPAHDQND
YEVGQRHGLEAISIMDSRGALINVPPPFLGLPRFEARKAVLVALKERGLFRGIEDNPMVV
PLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIREWC
ISRQLWWGHRIPAYFVTVSDPAVPPGEDPDGRYWVSGRNEAEAREKAAKEFGVSPDKISL
QQDEDVLDTWFSSGLFPLSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKL
TGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIYGISLQGLHNQLLNSNLDPSEVE
KAKEGQKADFPAGIPECGTDALRFGLCAYMSQGRDINLD
VNRILGYRHFCNKLWNATKFA
LRGLGKGFVPSPTSQPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLY
ELCDVYLECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRMP
QAPPSLCVTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIRPDCFLEVA
D
EATGALASAVSGYVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPARE
LGKLQAKRVEAQRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEAIALF
QKML
Sequence length 1264
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Aminoacyl-tRNA biosynthesis   Cytosolic tRNA aminoacylation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Combined oxidative phosphorylation deficiency Combined oxidative phosphorylation defect type 20 rs587776508, rs576462794, rs118203917, rs387906327, rs139430866, rs387906962, rs138119149, rs387907061, rs1562800908, rs397515421, rs397514598, rs397514610, rs397514611, rs397514612, rs201431517
View all (155 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Epileptic encephalopathy Epileptic encephalopathy rs587776508, rs121918334, rs121918317, rs121918321, rs74315390, rs28939684, rs74315391, rs74315392, rs118192244, rs121918622, rs121918623, rs121917953, rs121917955, rs121918624, rs121918625
View all (860 more)
Myopia Myopia rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805
View all (6 more)
Unknown
Disease term Disease name Evidence References Source
Sarcoidosis Sarcoidosis 26651848 ClinVar
Combined Oxidative Phosphorylation Deficiency combined oxidative phosphorylation defect type 20 GenCC
Neurodevelopmental Disorder With Microcephaly, Seizures, And Cortical Atrophy neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy GenCC
Psoriasis Psoriasis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Atrophy Associate 29691655
Autosomal Recessive Primary Microcephaly Associate 30755602
Brain Diseases Associate 30755602
Breast Neoplasms Associate 39940786
Diabetes Mellitus Type 2 Associate 31932636
Epilepsia Partialis Continua Associate 29314548
Intellectual Disability Associate 30755602
Melanoma Associate 36303162
Microcephaly Associate 29691655
Mitochondrial Diseases Associate 29314548