Gene Gene information from NCBI Gene database.
Entrez ID 7337
Gene name Ubiquitin protein ligase E3A
Gene symbol UBE3A
Synonyms (NCBI Gene)
ANCRASE6-APEPVE6APHPVE6APIX1
Chromosome 15
Chromosome location 15q11.2
Summary This gene encodes an E3 ubiquitin-protein ligase, part of the ubiquitin protein degradation system. This imprinted gene is maternally expressed in brain and biallelically expressed in other tissues. Maternally inherited deletion of this gene causes Angelm
miRNA miRNA information provided by mirtarbase database.
264
miRTarBase ID miRNA Experiments Reference
MIRT019860 hsa-miR-375 Microarray 20215506
MIRT030496 hsa-miR-24-3p Microarray 19748357
MIRT019860 hsa-miR-375 PAR-CLIP 21572407
MIRT546137 hsa-miR-5692a PAR-CLIP 21572407
MIRT546136 hsa-miR-541-5p PAR-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
60
GO ID Ontology Definition Evidence Reference
GO:0000209 Process Protein polyubiquitination IBA
GO:0000209 Process Protein polyubiquitination IEA
GO:0000502 Component Proteasome complex IEA
GO:0001541 Process Ovarian follicle development IEA
GO:0003713 Function Transcription coactivator activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601623 12496 ENSG00000114062
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q05086
Protein name Ubiquitin-protein ligase E3A (EC 2.3.2.26) (E6AP ubiquitin-protein ligase) (HECT-type ubiquitin transferase E3A) (Human papillomavirus E6-associated protein) (Oncogenic protein-associated protein E6-AP) (Renal carcinoma antigen NY-REN-54)
Protein function E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates (PubMed:10373495, PubMed:16772533, PubMed:19204938, PubMed:19233847, PubMed:19325566, PubMe
PDB 1C4Z , 1D5F , 1EQX , 2KR1 , 4GIZ , 4XR8 , 6SJV , 6SLM , 6TGK , 6U19 , 7Q41 , 7QPB , 8ENP , 8EPT , 8GCR , 8JRN , 8JRO , 8JRP , 8JRQ , 8JRR , 8R1F , 8R1G , 9CHT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16558 AZUL 29 83 Amino-terminal Zinc-binding domain of ubiquitin ligase E3A Domain
PF00632 HECT 576 875 HECT-domain (ubiquitin-transferase) Domain
Sequence
MEKLHQCYWKSGEPQSDDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTF
LRMDNNAAAIKALELYKINAKLC
DPHPSKKGASSAYLENSKGAPNNSCSEIKMNKKGARI
DFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKS
LQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRIGDSSQGDNNLQKLGPDDVSVDIDAIR
RVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPE
YLEMALPLFCKAMSKLPLAAQGKLIRLWSKYNADQIRRMMETFQQLITYKVISNEFNSRN
LVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNK
KGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNEVLEMDKDYTFFKVETENKFSFMTC
PFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRL
EMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFW
FNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQ
SLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDY
ILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGY
TRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTS
HTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
Sequence length 875
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ubiquitin mediated proteolysis
Human papillomavirus infection
Viral carcinogenesis
  Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
715
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Angelman syndrome Pathogenic; Likely pathogenic rs2080191422, rs398124440, rs2152694181, rs2152515149, rs2152848080, rs2152507134, rs2077884610, rs1445563777, rs2152684235, rs2152693602, rs2152683847, rs587781225, rs2152515439, rs587780565, rs587780566
View all (175 more)
RCV001334474
RCV002513849
RCV001726508
RCV001379188
RCV001377695
RCV001386580
RCV001788548
RCV001706787
RCV001785106
RCV001990284
RCV001994246
RCV001933306
RCV001931349
RCV000144538
RCV000144539
RCV000144540
RCV000144541
RCV000144542
RCV000144543
RCV000144544
RCV000144545
RCV000144546
RCV000144547
RCV000144548
RCV000144549
RCV000144550
RCV000144551
RCV000144552
RCV000144553
RCV000144554
RCV000144555
RCV000144556
RCV000144557
RCV000144558
RCV000144559
RCV001926484
RCV002002385
RCV001864353
RCV000144264
RCV000144265
RCV000144266
RCV000144267
RCV000144268
RCV000144269
RCV000144270
RCV000144271
RCV000144272
RCV000144273
RCV000144274
RCV000144275
RCV000144276
RCV000144277
RCV000144278
RCV000144279
RCV000144280
RCV000144281
RCV000144282
RCV000144283
RCV000144284
RCV000144285
RCV000144286
RCV000144287
RCV000144288
RCV000144289
RCV000144290
RCV000144291
RCV000144292
RCV000144293
RCV000144294
RCV000144295
RCV000144296
RCV000144297
RCV000144298
RCV000144299
RCV000144300
RCV000144301
RCV000144302
RCV000144303
RCV000144304
RCV000144305
RCV000144306
RCV000144307
RCV000144308
RCV000144309
RCV000144310
RCV000144311
RCV000144312
RCV000144313
RCV000144314
RCV000144315
RCV000144316
RCV000144317
RCV000144318
RCV000144319
RCV000144320
RCV000144321
RCV000147882
RCV002226830
RCV002246802
RCV000147883
RCV000147881
RCV000147875
RCV000147874
RCV000147873
RCV000147872
RCV000147870
RCV000147868
RCV000147867
RCV000147866
RCV000147865
RCV000147864
RCV000147860
RCV000147859
RCV000147892
RCV000147891
RCV000147889
RCV000147888
RCV000147887
RCV000147886
RCV002280268
RCV002287308
RCV002466383
RCV000701063
RCV000633514
RCV002851452
RCV000194248
RCV000193223
RCV000194169
RCV000195178
RCV000193045
RCV000194009
RCV000194951
RCV000196394
RCV003005988
RCV000202543
RCV000202457
RCV000008430
RCV000008431
RCV000008432
RCV000008433
RCV000008436
RCV002810041
RCV003133066
RCV003152877
RCV003223601
RCV003224755
RCV004546472
RCV000509135
RCV003333363
RCV003334463
RCV003340751
RCV003445292
RCV003510753
RCV003621118
RCV003621059
RCV003621356
RCV003621355
RCV003621454
RCV004560509
RCV000416334
RCV000470807
RCV001507065
RCV000989273
RCV000690582
RCV001044278
RCV002248757
RCV000543322
RCV005859348
RCV002280132
RCV001507035
RCV000677659
RCV000688988
RCV000699666
RCV001507036
RCV000810663
RCV000824274
RCV000799398
RCV000853580
RCV000989270
RCV000989271
RCV000989272
RCV000989274
RCV000989275
RCV001004699
RCV001048607
RCV001050018
RCV001071345
RCV001221493
RCV001203004
RCV001235083
RCV001260931
RCV001264747
RCV001265637
RCV001290256
Developmental delay Likely pathogenic rs1057518777 RCV000414808
Epileptic encephalopathy Pathogenic rs863225068 RCV001799632
Intellectual disability Pathogenic; Likely pathogenic rs587784527, rs1057518777, rs1595808957, rs997044541, rs2074492359 RCV001260843
RCV000414808
RCV000850199
RCV001260805
RCV001260778
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs1555403046, rs1555403067 -
Autism Uncertain significance rs864309507 RCV000202490
Congenital myopathy Benign rs141984760 RCV005621884
Developmental disorder Uncertain significance rs201004098 RCV001843751
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 10424818
Angelman Syndrome Associate 10424818, 10647895, 11258627, 11748306, 14966115, 16162432, 17036311, 17965627, 20729760, 21204213, 21587322, 21633703, 22426236, 22645313, 23256887
View all (37 more)
Angelman Syndrome Inhibit 15607424, 32152487, 32916124, 35218942, 36012404
Ataxia Associate 10424818
Autism Spectrum Disorder Associate 22645313, 26216987, 30257870, 31312421, 32722525, 33308194
Autistic Disorder Associate 19404257, 19557195, 28559284, 28835500, 28925810, 33116122, 33308194, 36282706
Autosomal Recessive Primary Microcephaly Associate 21633703
Bipolar Disorder Associate 32871949
Body Dysmorphic Disorders Associate 26993267
Breast Neoplasms Associate 31329371