Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7292
Gene name Gene Name - the full gene name approved by the HGNC.
TNF superfamily member 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TNFSF4
Synonyms (NCBI Gene) Gene synonyms aliases
CD134L, CD252, GP34, OX-40L, OX4OL, TNLG2B, TXGP1
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q25.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a cytokine of the tumor necrosis factor (TNF) ligand family. The encoded protein functions in T cell antigen-presenting cell (APC) interactions and mediates adhesion of activated T cells to endothelial cells. Polymorphisms in this gene h
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT615655 hsa-miR-8485 HITS-CLIP 23824327
MIRT670334 hsa-miR-329-3p HITS-CLIP 23824327
MIRT670333 hsa-miR-362-3p HITS-CLIP 23824327
MIRT670332 hsa-miR-603 HITS-CLIP 23824327
MIRT670331 hsa-miR-3941 HITS-CLIP 23824327
Transcription factors
Transcription factor Regulation Reference
HDAC11 Activation 21239696
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0001819 Process Positive regulation of cytokine production IBA
GO:0002215 Process Defense response to nematode ISS
GO:0002526 Process Acute inflammatory response ISS
GO:0002639 Process Positive regulation of immunoglobulin production ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603594 11934 ENSG00000117586
Protein
UniProt ID P23510
Protein name Tumor necrosis factor ligand superfamily member 4 (Glycoprotein Gp34) (OX40 ligand) (OX40L) (TAX transcriptionally-activated glycoprotein 1) (CD antigen CD252)
Protein function Cytokine that binds to TNFRSF4. Co-stimulates T-cell proliferation and cytokine production.
PDB 2HEV
Family and domains
Sequence
MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ
SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ
KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF
CVL
Sequence length 183
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cytokine-cytokine receptor interaction   TNFs bind their physiological receptors
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Alopecia Areata Alopecia areata N/A N/A GWAS
Asthma Asthma (childhood onset), Atopic asthma, Asthma, Asthma onset (childhood vs adult), Asthma (age of onset) N/A N/A GWAS
Dermatitis Atopic dermatitis N/A N/A GWAS
Diabetes Type 2 diabetes N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Acute Coronary Syndrome Associate 21445270
Alzheimer Disease Associate 37742913
Arthritis Rheumatoid Associate 24532676, 25359291, 37457686
Aspergillosis Allergic Bronchopulmonary Associate 20714107
Asthma Associate 20139223, 24851948, 33656624, 34103634
Ataxia Telangiectasia Associate 18674748
Atherosclerosis Associate 18674748, 21445270, 22870213, 24068192, 29921578, 30797237
Autoimmune Diseases Associate 22870213, 28470010, 30797237, 30944836, 36389676
Behcet Syndrome Associate 27872495
Breast Neoplasms Associate 22870213, 29949525, 31292534, 34545132, 35844785, 37643511