Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7249
Gene name Gene Name - the full gene name approved by the HGNC.
TSC complex subunit 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TSC2
Synonyms (NCBI Gene) Gene synonyms aliases
LAM, PPP1R160, TSC4
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
Mutations in this gene lead to tuberous sclerosis complex. Its gene product is believed to be a tumor suppressor and is able to stimulate specific GTPases. The protein associates with hamartin in a cytosolic complex, possibly acting as a chaperone for ham
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28934872 G>A Pathogenic, not-provided Missense variant, coding sequence variant
rs35282988 G>A Benign, likely-benign, not-provided, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs35660529 C>T Conflicting-interpretations-of-pathogenicity, not-provided, likely-benign 5 prime UTR variant, intron variant, missense variant, coding sequence variant
rs45437193 C>T Pathogenic, not-provided Stop gained, coding sequence variant
rs45438205 C>T Pathogenic, not-provided Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT050917 hsa-miR-17-5p CLASH 23622248
MIRT038502 hsa-miR-296-3p CLASH 23622248
MIRT037646 hsa-miR-744-5p CLASH 23622248
MIRT1458129 hsa-miR-4436a CLIP-seq
MIRT1458130 hsa-miR-615-5p CLIP-seq
Transcription factors
Transcription factor Regulation Reference
AR Repression 21036700
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001843 Process Neural tube closure ISS
GO:0002181 Process Cytoplasmic translation IDA 8706699, 34314702
GO:0005096 Function GTPase activator activity IBA
GO:0005096 Function GTPase activator activity IDA 9045618, 12842888, 12906785, 22819219, 24529379, 33436626
GO:0005096 Function GTPase activator activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
191092 12363 ENSG00000103197
Protein
UniProt ID P49815
Protein name Tuberin (Tuberous sclerosis 2 protein)
Protein function Catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolecule biosyn
PDB 7DL2 , 9CE3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11864 DUF3384 54 470 Domain of unknown function (DUF3384) Family
PF03542 Tuberin 555 903 Tuberin Family
PF02145 Rap_GAP 1561 1749 Rap/ran-GAP Family
Tissue specificity TISSUE SPECIFICITY: Liver, brain, heart, lymphocytes, fibroblasts, biliary epithelium, pancreas, skeletal muscle, kidney, lung and placenta. {ECO:0000269|PubMed:8269512}.
Sequence
MAKPTSKDSGLKEKFKILLGLGTPRPNPRSAEGKQTEFIITAEILRELSMECGLNNRIRM
IGQICEVAKTKKFEEHAVEALWKAVADLLQPERPLEARHAVLALLKAIVQGQGERLGVLR
ALFFKVIKDYPSNEDLHERLEVFKALTDNGRHITYLEEELADFVLQWMDVGLSSEFLLVL
VNLVKFNSCYLDEYIARMVQMICLLCVRTASSVDIEVSLQVLDAVVCYNCLPAESLPLFI
VTLCRTINVKELCEPCWKLMRNLLGTHLGHSAIYNMCHLMEDRAYMEDAPLLRGAVFFVG
MALWGAHRLYSLRNSPTSVLPSFYQAMACPNEVVSYEIVLSITRLIKKYRKELQVVAWDI
LLNIIERLLQQLQTLDSPELRTIVHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPE
SSLLNLISYRAQSIHPAKDGWIQNLQALMERFFRSESRGAVRIKVLDVLS
FVLLINRQFY
EEELINSVVISQLSHIPEDKDHQVRKLATQLLVDLAEGCHTHHFNSLLDIIEKVMARSLS
PPPELEERDVAAYSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYEMLVSHIQLHYKH
SYTLPIASSIRLQAFDFLLLLRADSLHRLGLPNKDGVVRFSPYCVCDYMEPERGSEKKTS
GPLSPPTGPPGPAPAGPAVRLGSVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYK
VLIFTSPCSVDQLCSALCSMLSGPKTLERLRGAPEGFSRTDLHLAVVPVLTALISYHNYL
DKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATASMA
VPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRC
RLP
FRKDFVPFITKGLRSNVLLSFDDTPEKDSFRARSTSLNERPKSLRIARPPKQGLNNS
PPVKEFKESSAAEAFRCRSISVSEHVVRSRIQTSLTSASLGSADENSVAQADDSLKNLHL
ELTETCLDMMARYVFSNFTAVPKRSPVGEFLLAGGRTKTWLVGNKLVTVTTSVGTGTRSL
LGLDSGELQSGPESSSSPGVHVRQTKEAPAKLESQAGQQVSRGARDRVRSMSGGHGLRVG
ALDVPASQFLGSATSPGPRTAPAAKPEKASAGTRVPVQEKTNLAAYVPLLTQGWAEILVR
RPTGNTSWLMSLENPLSPFSSDINNMPLQELSNALMAAERFKEHRDTALYKSLSVPAAST
AKPPPLPRSNTVASFSSLYQSSCQGQLHRSVSWADSAVVMEEGSPGEVPVLVEPPGLEDV
EAALGMDRRTDAYSRSSSVSSQEEKSLHAEELVGRGIPIERVVSSEGGRPSVDLSFQPSQ
PLSKSSSSPELQTLQDILGDPGDKADVGRLSPEVKARSQSGTLDGESAAWSASGEDSRGQ
PEGPLPSSSPRSPSGLRPRGYTISDSAPSRRGKRVERDALKSRATASNAEKVPGINPSFV
FLQLYHSPFFGDESNKPILLPNESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELA
ILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFH
IATLMPTKDVDKHRCDKKRHLGNDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYEC
NLVSLQCRKDMEGLVDTSVAKIVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKW
IARLRHIKR
LRQRICEEAAYSNPSLPLVHPPSHSKAPAQTPAEPTPGYEVGQRKRLISSV
EDFTEFV
Sequence length 1807
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Phospholipase D signaling pathway
p53 signaling pathway
Autophagy - animal
mTOR signaling pathway
PI3K-Akt signaling pathway
AMPK signaling pathway
Longevity regulating pathway
Cellular senescence
Thermogenesis
Insulin signaling pathway
Thyroid hormone signaling pathway
Human cytomegalovirus infection
Human papillomavirus infection
Herpes simplex virus 1 infection
Choline metabolism in cancer
  Macroautophagy
Inhibition of TSC complex formation by PKB
AKT phosphorylates targets in the cytosol
Energy dependent regulation of mTOR by LKB1-AMPK
TP53 Regulates Metabolic Genes
Constitutive Signaling by AKT1 E17K in Cancer
TBC/RABGAPs
<
Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Isolated focal cortical dysplasia Isolated focal cortical dysplasia type II rs45517222, rs1060500972, rs397514939, rs397514897, rs45517329, rs45516293 N/A
lymphangiomyomatosis Lymphangiomyomatosis rs397515287, rs137854157, rs45517213, rs45517132, rs397515023, rs45517403, rs45517148, rs45514095, rs45517179, rs45517205, rs137854360, rs28934872, rs137854210, rs45483392, rs137854320
View all (3 more)
N/A
Tuberous Sclerosis Tuberous sclerosis 2, Tuberous sclerosis syndrome, Tuberous sclerosis 1 rs137854113, rs137854327, rs1567386603, rs137854302, rs137854216, rs45517214, rs397514929, rs45503995, rs45517334, rs397515203, rs45517232, rs45517386, rs1555501373, rs137854328, rs397515082
View all (538 more)
N/A
Mental retardation intellectual disability rs137854128 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Acute Myeloid Leukemia Acute myeloid leukemia Reduced expression levels of LZTR1, NF1, TSC1, and TSC2 correlate with reduced sensitivity to sorafenib in samples from patients with acute myeloid leukemia and deficiency results in hyperactivation of MAPK or MTOR pathways in acute myeloid leukemia cells 33375770 CBGDA
autism spectrum disorder Autism spectrum disorder N/A N/A ClinVar
Brain Neoplasms Neoplasm of brain N/A N/A ClinVar
Hirschsprung Disease Hirschsprung disease, susceptibility to, 1 N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Neoplasms Associate 23867796
Adenocarcinoma Associate 11696455, 21751195
Adenocarcinoma of Lung Associate 32083571
Adenomatous Polyposis Coli Associate 39519399
Alzheimer Disease Associate 24373378
Angina Stable Associate 30220708
Angiofibroma Associate 32461669, 35358092, 36104799, 37141891
Angiomyolipoma Associate 10823953, 11112665, 16192644, 17003820, 18958173, 19443708, 21949787, 22791333, 23705901, 25782670, 27494029, 27640314, 29512829, 29697822, 29764404
View all (8 more)
Appendiceal Neoplasms Associate 33295976
Astrocytoma Associate 14723270, 16237225, 20133820, 24917535, 25227171, 27625244, 32461669, 33051600, 37629066