Gene Gene information from NCBI Gene database.
Entrez ID 7249
Gene name TSC complex subunit 2
Gene symbol TSC2
Synonyms (NCBI Gene)
LAMPPP1R160TSC4
Chromosome 16
Chromosome location 16p13.3
Summary Mutations in this gene lead to tuberous sclerosis complex. Its gene product is believed to be a tumor suppressor and is able to stimulate specific GTPases. The protein associates with hamartin in a cytosolic complex, possibly acting as a chaperone for ham
SNPs SNP information provided by dbSNP.
525
SNP ID Visualize variation Clinical significance Consequence
rs28934872 G>A Pathogenic, not-provided Missense variant, coding sequence variant
rs35282988 G>A Benign, likely-benign, not-provided, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs35660529 C>T Conflicting-interpretations-of-pathogenicity, not-provided, likely-benign 5 prime UTR variant, intron variant, missense variant, coding sequence variant
rs45437193 C>T Pathogenic, not-provided Stop gained, coding sequence variant
rs45438205 C>T Pathogenic, not-provided Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
7
miRTarBase ID miRNA Experiments Reference
MIRT050917 hsa-miR-17-5p CLASH 23622248
MIRT038502 hsa-miR-296-3p CLASH 23622248
MIRT037646 hsa-miR-744-5p CLASH 23622248
MIRT1458129 hsa-miR-4436a CLIP-seq
MIRT1458130 hsa-miR-615-5p CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
AR Repression 21036700
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
65
GO ID Ontology Definition Evidence Reference
GO:0001843 Process Neural tube closure ISS
GO:0002181 Process Cytoplasmic translation IDA 8706699, 34314702
GO:0005096 Function GTPase activator activity IBA
GO:0005096 Function GTPase activator activity IDA 9045618, 12842888, 12906785, 22819219, 24529379, 33436626
GO:0005096 Function GTPase activator activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
191092 12363 ENSG00000103197
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P49815
Protein name Tuberin (Tuberous sclerosis 2 protein)
Protein function Catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolecule biosyn
PDB 7DL2 , 9CE3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11864 DUF3384 54 470 Domain of unknown function (DUF3384) Family
PF03542 Tuberin 555 903 Tuberin Family
PF02145 Rap_GAP 1561 1749 Rap/ran-GAP Family
Tissue specificity TISSUE SPECIFICITY: Liver, brain, heart, lymphocytes, fibroblasts, biliary epithelium, pancreas, skeletal muscle, kidney, lung and placenta. {ECO:0000269|PubMed:8269512}.
Sequence
MAKPTSKDSGLKEKFKILLGLGTPRPNPRSAEGKQTEFIITAEILRELSMECGLNNRIRM
IGQICEVAKTKKFEEHAVEALWKAVADLLQPERPLEARHAVLALLKAIVQGQGERLGVLR
ALFFKVIKDYPSNEDLHERLEVFKALTDNGRHITYLEEELADFVLQWMDVGLSSEFLLVL
VNLVKFNSCYLDEYIARMVQMICLLCVRTASSVDIEVSLQVLDAVVCYNCLPAESLPLFI
VTLCRTINVKELCEPCWKLMRNLLGTHLGHSAIYNMCHLMEDRAYMEDAPLLRGAVFFVG
MALWGAHRLYSLRNSPTSVLPSFYQAMACPNEVVSYEIVLSITRLIKKYRKELQVVAWDI
LLNIIERLLQQLQTLDSPELRTIVHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPE
SSLLNLISYRAQSIHPAKDGWIQNLQALMERFFRSESRGAVRIKVLDVLS
FVLLINRQFY
EEELINSVVISQLSHIPEDKDHQVRKLATQLLVDLAEGCHTHHFNSLLDIIEKVMARSLS
PPPELEERDVAAYSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYEMLVSHIQLHYKH
SYTLPIASSIRLQAFDFLLLLRADSLHRLGLPNKDGVVRFSPYCVCDYMEPERGSEKKTS
GPLSPPTGPPGPAPAGPAVRLGSVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYK
VLIFTSPCSVDQLCSALCSMLSGPKTLERLRGAPEGFSRTDLHLAVVPVLTALISYHNYL
DKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATASMA
VPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRC
RLP
FRKDFVPFITKGLRSNVLLSFDDTPEKDSFRARSTSLNERPKSLRIARPPKQGLNNS
PPVKEFKESSAAEAFRCRSISVSEHVVRSRIQTSLTSASLGSADENSVAQADDSLKNLHL
ELTETCLDMMARYVFSNFTAVPKRSPVGEFLLAGGRTKTWLVGNKLVTVTTSVGTGTRSL
LGLDSGELQSGPESSSSPGVHVRQTKEAPAKLESQAGQQVSRGARDRVRSMSGGHGLRVG
ALDVPASQFLGSATSPGPRTAPAAKPEKASAGTRVPVQEKTNLAAYVPLLTQGWAEILVR
RPTGNTSWLMSLENPLSPFSSDINNMPLQELSNALMAAERFKEHRDTALYKSLSVPAAST
AKPPPLPRSNTVASFSSLYQSSCQGQLHRSVSWADSAVVMEEGSPGEVPVLVEPPGLEDV
EAALGMDRRTDAYSRSSSVSSQEEKSLHAEELVGRGIPIERVVSSEGGRPSVDLSFQPSQ
PLSKSSSSPELQTLQDILGDPGDKADVGRLSPEVKARSQSGTLDGESAAWSASGEDSRGQ
PEGPLPSSSPRSPSGLRPRGYTISDSAPSRRGKRVERDALKSRATASNAEKVPGINPSFV
FLQLYHSPFFGDESNKPILLPNESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELA
ILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFH
IATLMPTKDVDKHRCDKKRHLGNDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYEC
NLVSLQCRKDMEGLVDTSVAKIVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKW
IARLRHIKR
LRQRICEEAAYSNPSLPLVHPPSHSKAPAQTPAEPTPGYEVGQRKRLISSV
EDFTEFV
Sequence length 1807
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Phospholipase D signaling pathway
p53 signaling pathway
Autophagy - animal
mTOR signaling pathway
PI3K-Akt signaling pathway
AMPK signaling pathway
Longevity regulating pathway
Cellular senescence
Thermogenesis
Insulin signaling pathway
Thyroid hormone signaling pathway
Human cytomegalovirus infection
Human papillomavirus infection
Herpes simplex virus 1 infection
Choline metabolism in cancer
  Macroautophagy
Inhibition of TSC complex formation by PKB
AKT phosphorylates targets in the cytosol
Energy dependent regulation of mTOR by LKB1-AMPK
TP53 Regulates Metabolic Genes
Constitutive Signaling by AKT1 E17K in Cancer
TBC/RABGAPs
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
22160
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal cerebral morphology Likely pathogenic; Pathogenic rs137854027 RCV002274905
Abnormality of the nervous system Pathogenic rs2151317705 RCV001814392
Autism spectrum disorder Pathogenic rs1567533189 RCV000754676
Bone osteosarcoma Likely pathogenic; Pathogenic rs1555508929 RCV000505584
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs2151549002, rs2090619495, rs397514906, rs397514907, rs397515137, rs397515237, rs397515238, rs397515258, rs397515259 -
Acute myeloid leukemia Benign; Uncertain significance rs45517351, rs757274577 RCV005890315
RCV005603682
Adrenocortical carcinoma, hereditary Benign rs1800720 RCV005890324
Astroblastoma, MN1-altered Uncertain significance rs1596457926 RCV003325215
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Neoplasms Associate 23867796
Adenocarcinoma Associate 11696455, 21751195
Adenocarcinoma of Lung Associate 32083571
Adenomatous Polyposis Coli Associate 39519399
Alzheimer Disease Associate 24373378
Angina Stable Associate 30220708
Angiofibroma Associate 32461669, 35358092, 36104799, 37141891
Angiomyolipoma Associate 10823953, 11112665, 16192644, 17003820, 18958173, 19443708, 21949787, 22791333, 23705901, 25782670, 27494029, 27640314, 29512829, 29697822, 29764404
View all (8 more)
Appendiceal Neoplasms Associate 33295976
Astrocytoma Associate 14723270, 16237225, 20133820, 24917535, 25227171, 27625244, 32461669, 33051600, 37629066