Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Transcription factors Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	7156
Gene name	DNA topoisomerase III alpha
Gene symbol	TOP3A
Synonyms (NCBI Gene)	MGRISCE2PEOB5TOP3ZGRF7
Chromosome	17
Chromosome location	17p11.2
Summary	This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This enzyme catalyzes the transient breaking and rejoining of a single strand of DNA which allows the strands to pass through one a

Show/Hide all (6)

SNP ID	Visualize variation	Clinical significance	Consequence
rs200944917	G>A,T	Pathogenic	Synonymous variant, stop gained, coding sequence variant, 5 prime UTR variant, non coding transcript variant
rs376902371	T>C	Pathogenic	Intron variant, coding sequence variant, 5 prime UTR variant, missense variant, non coding transcript variant, genic upstream transcript variant
rs752838075	G>-,GG	Pathogenic	Coding sequence variant, frameshift variant, non coding transcript variant
rs1288928564	C>-	Pathogenic	Coding sequence variant, frameshift variant, non coding transcript variant
rs1555568139	A>-	Pathogenic	Frameshift variant, non coding transcript variant, coding sequence variant
rs1597981046	TA>-	Likely-pathogenic	Frameshift variant, 5 prime UTR variant, coding sequence variant, non coding transcript variant

242

Show/Hide all (242)

miRTarBase ID	miRNA	Experiments	Reference
MIRT046639	hsa-miR-222-3p	CLASH	23622248
MIRT044415	hsa-miR-320a	CLASH	23622248
MIRT680154	hsa-miR-5571-5p	HITS-CLIP	23824327
MIRT680153	hsa-miR-660-3p	HITS-CLIP	23824327
MIRT680152	hsa-miR-4324	HITS-CLIP	23824327
MIRT680151	hsa-miR-544b	HITS-CLIP	23824327
MIRT680150	hsa-miR-4722-3p	HITS-CLIP	23824327
MIRT680149	hsa-miR-6727-3p	HITS-CLIP	23824327
MIRT680148	hsa-miR-6747-3p	HITS-CLIP	23824327
MIRT680146	hsa-miR-3653-5p	HITS-CLIP	23824327
MIRT680147	hsa-miR-1976	HITS-CLIP	23824327
MIRT680145	hsa-miR-6791-3p	HITS-CLIP	23824327
MIRT680144	hsa-miR-6829-3p	HITS-CLIP	23824327
MIRT680143	hsa-miR-1200	HITS-CLIP	23824327
MIRT680142	hsa-miR-4279	HITS-CLIP	23824327
MIRT680141	hsa-miR-6869-5p	HITS-CLIP	23824327
MIRT680154	hsa-miR-5571-5p	HITS-CLIP	23824327
MIRT680153	hsa-miR-660-3p	HITS-CLIP	23824327
MIRT680152	hsa-miR-4324	HITS-CLIP	23824327
MIRT680151	hsa-miR-544b	HITS-CLIP	23824327
MIRT680150	hsa-miR-4722-3p	HITS-CLIP	23824327
MIRT680149	hsa-miR-6727-3p	HITS-CLIP	23824327
MIRT680148	hsa-miR-6747-3p	HITS-CLIP	23824327
MIRT680146	hsa-miR-3653-5p	HITS-CLIP	23824327
MIRT680147	hsa-miR-1976	HITS-CLIP	23824327
MIRT680145	hsa-miR-6791-3p	HITS-CLIP	23824327
MIRT680144	hsa-miR-6829-3p	HITS-CLIP	23824327
MIRT680143	hsa-miR-1200	HITS-CLIP	23824327
MIRT680142	hsa-miR-4279	HITS-CLIP	23824327
MIRT680141	hsa-miR-6869-5p	HITS-CLIP	23824327
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT1447308	hsa-miR-138	CLIP-seq
MIRT1447309	hsa-miR-141	CLIP-seq
MIRT1447310	hsa-miR-200a	CLIP-seq
MIRT1447311	hsa-miR-24	CLIP-seq
MIRT1447312	hsa-miR-3180-5p	CLIP-seq
MIRT1447313	hsa-miR-3614-5p	CLIP-seq
MIRT1447314	hsa-miR-3670	CLIP-seq
MIRT1447315	hsa-miR-3909	CLIP-seq
MIRT1447316	hsa-miR-4260	CLIP-seq
MIRT1447317	hsa-miR-4269	CLIP-seq
MIRT1447318	hsa-miR-4283	CLIP-seq
MIRT1447319	hsa-miR-4284	CLIP-seq
MIRT1447320	hsa-miR-4456	CLIP-seq
MIRT1447321	hsa-miR-4489	CLIP-seq
MIRT1447322	hsa-miR-4514	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT1447324	hsa-miR-4692	CLIP-seq
MIRT1447325	hsa-miR-4742-5p	CLIP-seq
MIRT1447326	hsa-miR-4772-3p	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT1447328	hsa-miR-512-3p	CLIP-seq
MIRT1447329	hsa-miR-513a-3p	CLIP-seq
MIRT1447330	hsa-miR-665	CLIP-seq
MIRT2133726	hsa-miR-1234	CLIP-seq
MIRT2133727	hsa-miR-1275	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT2133728	hsa-miR-214	CLIP-seq
MIRT2133729	hsa-miR-302a	CLIP-seq
MIRT2133730	hsa-miR-302b	CLIP-seq
MIRT2133731	hsa-miR-302c	CLIP-seq
MIRT2133732	hsa-miR-302d	CLIP-seq
MIRT2133733	hsa-miR-302e	CLIP-seq
MIRT2133734	hsa-miR-3120-3p	CLIP-seq
MIRT2133735	hsa-miR-3130-3p	CLIP-seq
MIRT2133736	hsa-miR-3164	CLIP-seq
MIRT2133737	hsa-miR-3189-3p	CLIP-seq
MIRT2133738	hsa-miR-3619-5p	CLIP-seq
MIRT2133739	hsa-miR-362-5p	CLIP-seq
MIRT1447314	hsa-miR-3670	CLIP-seq
MIRT2133740	hsa-miR-372	CLIP-seq
MIRT2133741	hsa-miR-373	CLIP-seq
MIRT2133742	hsa-miR-4252	CLIP-seq
MIRT1447317	hsa-miR-4269	CLIP-seq
MIRT2133743	hsa-miR-4291	CLIP-seq
MIRT2133744	hsa-miR-4419a	CLIP-seq
MIRT2133745	hsa-miR-4438	CLIP-seq
MIRT2133746	hsa-miR-4510	CLIP-seq
MIRT1447322	hsa-miR-4514	CLIP-seq
MIRT2133747	hsa-miR-4519	CLIP-seq
MIRT2133748	hsa-miR-4520a-5p	CLIP-seq
MIRT2133749	hsa-miR-4520b-5p	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT2133750	hsa-miR-4665-5p	CLIP-seq
MIRT1447324	hsa-miR-4692	CLIP-seq
MIRT2133751	hsa-miR-4731-5p	CLIP-seq
MIRT1447325	hsa-miR-4742-5p	CLIP-seq
MIRT1447326	hsa-miR-4772-3p	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT2133752	hsa-miR-500b	CLIP-seq
MIRT2133753	hsa-miR-5095	CLIP-seq
MIRT1447328	hsa-miR-512-3p	CLIP-seq
MIRT2133754	hsa-miR-520a-3p	CLIP-seq
MIRT2133755	hsa-miR-520b	CLIP-seq
MIRT2133756	hsa-miR-520c-3p	CLIP-seq
MIRT2133757	hsa-miR-520d-3p	CLIP-seq
MIRT2133758	hsa-miR-520e	CLIP-seq
MIRT2133759	hsa-miR-615-5p	CLIP-seq
MIRT2133760	hsa-miR-646	CLIP-seq
MIRT2133761	hsa-miR-661	CLIP-seq
MIRT2133762	hsa-miR-761	CLIP-seq
MIRT2133763	hsa-miR-922	CLIP-seq
MIRT2133764	hsa-miR-941	CLIP-seq
MIRT2354878	hsa-miR-1207-3p	CLIP-seq
MIRT2354879	hsa-miR-1228	CLIP-seq
MIRT2133726	hsa-miR-1234	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT2354880	hsa-miR-1288	CLIP-seq
MIRT2354881	hsa-miR-129-5p	CLIP-seq
MIRT2354882	hsa-miR-139-5p	CLIP-seq
MIRT2354883	hsa-miR-197	CLIP-seq
MIRT2133735	hsa-miR-3130-3p	CLIP-seq
MIRT2354884	hsa-miR-3149	CLIP-seq
MIRT2354885	hsa-miR-3199	CLIP-seq
MIRT2354886	hsa-miR-33a	CLIP-seq
MIRT2354887	hsa-miR-33b	CLIP-seq
MIRT2354888	hsa-miR-3618	CLIP-seq
MIRT1447314	hsa-miR-3670	CLIP-seq
MIRT2354889	hsa-miR-411	CLIP-seq
MIRT2133742	hsa-miR-4252	CLIP-seq
MIRT1447317	hsa-miR-4269	CLIP-seq
MIRT2133745	hsa-miR-4438	CLIP-seq
MIRT1447322	hsa-miR-4514	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT1447324	hsa-miR-4692	CLIP-seq
MIRT2354890	hsa-miR-4716-5p	CLIP-seq
MIRT2133751	hsa-miR-4731-5p	CLIP-seq
MIRT2354891	hsa-miR-4735-5p	CLIP-seq
MIRT1447325	hsa-miR-4742-5p	CLIP-seq
MIRT2354892	hsa-miR-4775	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT2354893	hsa-miR-502-5p	CLIP-seq
MIRT2133753	hsa-miR-5095	CLIP-seq
MIRT2354894	hsa-miR-5096	CLIP-seq
MIRT1447328	hsa-miR-512-3p	CLIP-seq
MIRT2354895	hsa-miR-590-3p	CLIP-seq
MIRT2133761	hsa-miR-661	CLIP-seq
MIRT2354896	hsa-miR-767-5p	CLIP-seq
MIRT2133764	hsa-miR-941	CLIP-seq
MIRT2396209	hsa-miR-3121-5p	CLIP-seq
MIRT1447314	hsa-miR-3670	CLIP-seq
MIRT1447317	hsa-miR-4269	CLIP-seq
MIRT1447322	hsa-miR-4514	CLIP-seq
MIRT1447324	hsa-miR-4692	CLIP-seq
MIRT1447325	hsa-miR-4742-5p	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT2648632	hsa-miR-1184	CLIP-seq
MIRT2648633	hsa-miR-1205	CLIP-seq
MIRT2354878	hsa-miR-1207-3p	CLIP-seq
MIRT2354879	hsa-miR-1228	CLIP-seq
MIRT2648634	hsa-miR-1252	CLIP-seq
MIRT2648635	hsa-miR-125a-3p	CLIP-seq
MIRT2648636	hsa-miR-1271	CLIP-seq
MIRT2648637	hsa-miR-128	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT2354880	hsa-miR-1288	CLIP-seq
MIRT2354881	hsa-miR-129-5p	CLIP-seq
MIRT1447308	hsa-miR-138	CLIP-seq
MIRT2648638	hsa-miR-182	CLIP-seq
MIRT1447311	hsa-miR-24	CLIP-seq
MIRT2396209	hsa-miR-3121-5p	CLIP-seq
MIRT2133735	hsa-miR-3130-3p	CLIP-seq
MIRT2354884	hsa-miR-3149	CLIP-seq
MIRT2648639	hsa-miR-3158-5p	CLIP-seq
MIRT2648640	hsa-miR-3160-5p	CLIP-seq
MIRT2648641	hsa-miR-3189-5p	CLIP-seq
MIRT2648642	hsa-miR-3192	CLIP-seq
MIRT2354885	hsa-miR-3199	CLIP-seq
MIRT1447313	hsa-miR-3614-5p	CLIP-seq
MIRT2648643	hsa-miR-3665	CLIP-seq
MIRT1447316	hsa-miR-4260	CLIP-seq
MIRT1447318	hsa-miR-4283	CLIP-seq
MIRT1447319	hsa-miR-4284	CLIP-seq
MIRT2648644	hsa-miR-4292	CLIP-seq
MIRT2648645	hsa-miR-4300	CLIP-seq
MIRT2648646	hsa-miR-4417	CLIP-seq
MIRT1447320	hsa-miR-4456	CLIP-seq
MIRT1447321	hsa-miR-4489	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT2354891	hsa-miR-4735-5p	CLIP-seq
MIRT2648647	hsa-miR-4758-3p	CLIP-seq
MIRT2354892	hsa-miR-4775	CLIP-seq
MIRT2648648	hsa-miR-4778-3p	CLIP-seq
MIRT2648649	hsa-miR-4794	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT1447328	hsa-miR-512-3p	CLIP-seq
MIRT2648650	hsa-miR-544	CLIP-seq
MIRT2354895	hsa-miR-590-3p	CLIP-seq
MIRT2648651	hsa-miR-657	CLIP-seq
MIRT2354896	hsa-miR-767-5p	CLIP-seq
MIRT2648652	hsa-miR-920	CLIP-seq
MIRT2648653	hsa-miR-96	CLIP-seq
MIRT2648632	hsa-miR-1184	CLIP-seq
MIRT2648633	hsa-miR-1205	CLIP-seq
MIRT2354879	hsa-miR-1228	CLIP-seq
MIRT2648634	hsa-miR-1252	CLIP-seq
MIRT2648635	hsa-miR-125a-3p	CLIP-seq
MIRT2648636	hsa-miR-1271	CLIP-seq
MIRT2648637	hsa-miR-128	CLIP-seq
MIRT1447307	hsa-miR-1281	CLIP-seq
MIRT2354881	hsa-miR-129-5p	CLIP-seq
MIRT1447308	hsa-miR-138	CLIP-seq
MIRT2648638	hsa-miR-182	CLIP-seq
MIRT1447311	hsa-miR-24	CLIP-seq
MIRT2396209	hsa-miR-3121-5p	CLIP-seq
MIRT2354884	hsa-miR-3149	CLIP-seq
MIRT2648639	hsa-miR-3158-5p	CLIP-seq
MIRT2648640	hsa-miR-3160-5p	CLIP-seq
MIRT2648641	hsa-miR-3189-5p	CLIP-seq
MIRT2648642	hsa-miR-3192	CLIP-seq
MIRT1447313	hsa-miR-3614-5p	CLIP-seq
MIRT2648643	hsa-miR-3665	CLIP-seq
MIRT2354889	hsa-miR-411	CLIP-seq
MIRT1447316	hsa-miR-4260	CLIP-seq
MIRT1447318	hsa-miR-4283	CLIP-seq
MIRT1447319	hsa-miR-4284	CLIP-seq
MIRT2648644	hsa-miR-4292	CLIP-seq
MIRT2648645	hsa-miR-4300	CLIP-seq
MIRT2648646	hsa-miR-4417	CLIP-seq
MIRT1447320	hsa-miR-4456	CLIP-seq
MIRT1447321	hsa-miR-4489	CLIP-seq
MIRT1447323	hsa-miR-4532	CLIP-seq
MIRT2354891	hsa-miR-4735-5p	CLIP-seq
MIRT2648647	hsa-miR-4758-3p	CLIP-seq
MIRT2354892	hsa-miR-4775	CLIP-seq
MIRT2648648	hsa-miR-4778-3p	CLIP-seq
MIRT2648649	hsa-miR-4794	CLIP-seq
MIRT1447327	hsa-miR-498	CLIP-seq
MIRT1447328	hsa-miR-512-3p	CLIP-seq
MIRT2648650	hsa-miR-544	CLIP-seq
MIRT2354895	hsa-miR-590-3p	CLIP-seq
MIRT2648651	hsa-miR-657	CLIP-seq
MIRT2648652	hsa-miR-920	CLIP-seq
MIRT2648653	hsa-miR-96	CLIP-seq

Show/Hide all (3)

Transcription factor	Regulation	Reference
USF1	Activation	9748294
USF2	Activation	11557042
YY1	Activation	9748294

Show/Hide all (34)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000724	Process	Double-strand break repair via homologous recombination	IDA	23543748
GO:0003677	Function	DNA binding	IEA
GO:0003677	Function	DNA binding	TAS	8622991
GO:0003697	Function	Single-stranded DNA binding	IDA	29290614
GO:0003916	Function	DNA topoisomerase activity	IEA
GO:0003917	Function	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IBA
GO:0003917	Function	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IDA	20445207
GO:0003917	Function	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEA
GO:0005515	Function	Protein binding	IPI	10728666, 15775963, 16537486, 20360068, 20711169, 20826342, 23509288, 24509834, 26496610, 33961781, 35271311
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	NAS	23543748
GO:0005634	Component	Nucleus	TAS	8622991
GO:0005654	Component	Nucleoplasm	IEA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005694	Component	Chromosome	IEA
GO:0005739	Component	Mitochondrion	HTP	34800366
GO:0005739	Component	Mitochondrion	IEA
GO:0005759	Component	Mitochondrial matrix	IEA
GO:0005759	Component	Mitochondrial matrix	TAS
GO:0006265	Process	DNA topological change	IBA
GO:0006265	Process	DNA topological change	IDA	20445207
GO:0006265	Process	DNA topological change	IEA
GO:0006281	Process	DNA repair	IBA
GO:0006310	Process	DNA recombination	IBA
GO:0008270	Function	Zinc ion binding	IEA
GO:0016605	Component	PML body	IDA	10728666
GO:0016853	Function	Isomerase activity	IEA
GO:0031422	Component	RecQ family helicase-topoisomerase III complex	IBA
GO:0031422	Component	RecQ family helicase-topoisomerase III complex	IPI	24984776
GO:0032042	Process	Mitochondrial DNA metabolic process	IMP	29290614
GO:0046872	Function	Metal ion binding	IEA
GO:0051304	Process	Chromosome separation	IMP	30057030
GO:0051321	Process	Meiotic cell cycle	TAS	8622991
GO:0071139	Process	Resolution of DNA recombination intermediates	IDA	23543748

MIM	HGNC	e!Ensembl
601243	11992	ENSG00000177302

Q13472

Protein name

DNA topoisomerase 3-alpha (EC 5.6.2.1) (DNA topoisomerase III alpha)

Protein function

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a targ

PDB

4CGY , 4CHT

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01751	Toprim	36 → 181	Toprim domain	Family
PF01131	Topoisom_bac	195 → 607	DNA topoisomerase	Family
PF01396	zf-C4_Topoisom	655 → 694	Topoisomerase DNA binding C4 zinc finger	Family
PF06839	zf-GRF	811 → 852	GRF zinc finger	Domain
PF06839	zf-GRF	895 → 939	GRF zinc finger	Domain

Tissue specificity

TISSUE SPECIFICITY: High expression is found in testis, heart, skeletal muscle and pancreas.

Sequence

MIFPVARYALRWLRRPEDRAFSRAAMEMALRGVRKVLCVAEKNDAAKGIADLLSNGRMRR
REGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK
YCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKAVKPNLQVLRARFSE
ITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLIS
YGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVLY
QLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI
SYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPT
KYTNNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDV
YPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAE
HIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKK
DKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQ
CNKDMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKF
KRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGGPPRASQPSGRLQANQSLNRMDNSQH
PQPADSRQTGSSKALAQTLPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKCNG
GSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCS
QPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSGAPSWTGDRGRTLES
EARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCPQNR

Sequence length

1001

Interactions

View interactions

	KEGG		Reactome
	Homologous recombination Fanconi anemia pathway		HDR through Single Strand Annealing (SSA) HDR through Homologous Recombination (HRR) Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA) Resolution of D-loop Structures through Holliday Junction Intermediates Homologous DNA Pairing and Strand Exchange Processing of DNA double-strand break ends Presynaptic phase of homologous DNA pairing and strand exchange Regulation of TP53 Activity through Phosphorylation G2/M DNA damage checkpoint

Show/Hide Causal Diseases (3)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Microcephaly, growth restriction, and increased sister chromatid exchange 2	Likely pathogenic; Pathogenic	rs200150335, rs1288928564, rs752838075, rs1555568139	RCV004594678 RCV000678245 RCV000678246 RCV000678247
Mitochondrial disease	Pathogenic	rs200944917, rs376902371	RCV000627803 RCV000627802
Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 5	Pathogenic; Likely pathogenic	rs1181170417, rs200944917, rs376902371, rs1597981046	RCV003890773 RCV000678503 RCV000678502 RCV000787954

Show/Hide Unknown Diseases (15)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Cervical cancer	Benign	rs115210168	RCV005925917
Cholangiocarcinoma	Benign	rs72464530	RCV005869694
Clear cell carcinoma of kidney	Uncertain significance; Benign	rs147447113, rs72464530	RCV005922822 RCV005869689
Colon adenocarcinoma	Uncertain significance	rs147447113	RCV005922820
Familial cancer of breast	Benign	rs72464530	RCV005869687
Lymphoma	Benign	rs72464530	RCV005869692
Malignant lymphoma, large B-cell, diffuse	Benign	rs72464530	RCV005869691
Malignant tumor of esophagus	Uncertain significance; Benign	rs147447113, rs72464530	RCV005922821 RCV005869688
Melanoma	Benign	rs72464530	RCV005869693
Sarcoma	Uncertain significance	rs147447113	RCV005922823
See cases	Uncertain significance	rs1555568077	RCV002253051
Sensorineural hearing loss disorder	Uncertain significance	rs1047455569	RCV001353210
Thyroid cancer, nonmedullary, 1	Uncertain significance	rs147447113	RCV005922824
TOP3A-related disorder	Benign; Likely benign; Conflicting classifications of pathogenicity; Uncertain significance	rs139844084, rs34739588, rs17805992, rs200807427, rs72464530, rs76300532, rs34098037, rs146672820, rs149912401, rs149596894, rs142931237, rs559137278, rs149535636, rs138815864, rs140948826 View all (14 more)	RCV004553759 RCV004553669 RCV004553691 RCV004548232 RCV004553802 RCV004553752 RCV004553766 RCV004553676 RCV004553765 RCV004553800 RCV004553754 RCV004550398 RCV004554039 RCV004548413 RCV004548431 RCV004548435 RCV004548434 RCV004550340 RCV004554145 RCV004554316 RCV004554322 RCV004548767 RCV004552754 RCV004554471 RCV004552797 RCV004553475 RCV004553447 RCV004550068 RCV004550017
Uveal melanoma	Benign	rs72464530	RCV005869690

Show/Hide Text Mining Associations (25)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Adenocarcinoma	Associate	28355294
Adenocarcinoma of Lung	Associate	28355294
Alternating hemiplegia of childhood	Associate	28877996, 31138797
ATR X syndrome	Associate	35920001
Bloom Syndrome	Associate	33631320, 35119917, 37013609
Breast Neoplasms	Associate	19432957
Carcinoma Non Small Cell Lung	Associate	28355294
Carcinoma Ovarian Epithelial	Associate	27315793
Hearing Loss	Associate	33713422
Hepatomegaly	Associate	33631320
Leukemia Lymphocytic Chronic B Cell	Inhibit	26970083
Lung Neoplasms	Stimulate	28355294
Mitochondrial Diseases	Associate	29290614, 33631320, 37013609
Muscular Diseases	Associate	37013609
Myopathy with Abnormal Lipid Metabolism	Associate	33631320
Neoplasms	Associate	16595695, 19432957, 35920001
Neoplasms	Inhibit	27315793
Neoplasms Basal Cell	Associate	25921176
Neoplasms Cystic Mucinous and Serous	Inhibit	27315793
Ophthalmoplegia	Associate	37013609
Ophthalmoplegia Chronic Progressive External	Associate	29290614
Osteosarcoma	Associate	22292074, 35920001
Peripheral Nervous System Diseases	Associate	37013609
Tucker syndrome	Associate	37013609
Urinary Bladder Neoplasms	Associate	25921176

TOP3A (DNA topoisomerase III alpha)