Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7153
Gene name Gene Name - the full gene name approved by the HGNC.
DNA topoisomerase II alpha
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TOP2A
Synonyms (NCBI Gene) Gene synonyms aliases
TOP2, TOP2alpha, TOPIIA, TP2A
Chromosome Chromosome number
17
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q21.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This nuclear enzyme is involved in processes such as chromosome condensation, chromatid separation, and the relief of torsional str
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs140672916 C>T Conflicting-interpretations-of-pathogenicity Intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT016473 hsa-miR-193b-3p Microarray 20304954
MIRT030914 hsa-miR-21-5p Microarray 18591254
MIRT047766 hsa-miR-7-5p CLASH 23622248
MIRT045191 hsa-miR-186-5p CLASH 23622248
MIRT037756 hsa-miR-708-5p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
ATF1 Unknown 12104051
E2F1 Activation 11313881
UHRF1 Unknown 10646863
YBX1 Unknown 10597187
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000228 Component Nuclear chromosome IDA 9049244
GO:0000287 Function Magnesium ion binding IDA 22323612
GO:0000712 Process Resolution of meiotic recombination intermediates IBA 21873635
GO:0000775 Component Chromosome, centromeric region IEA
GO:0000793 Component Condensed chromosome IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
126430 11989 ENSG00000131747
Protein
UniProt ID P11388
Protein name DNA topoisomerase 2-alpha (EC 5.6.2.2) (DNA topoisomerase II, alpha isozyme)
Protein function Key decatenating enzyme that alters DNA topology by binding to two double-stranded DNA molecules, generating a double-stranded break in one of the strands, passing the intact strand through the broken strand, and religating the broken strand (Pu
PDB 1ZXM , 1ZXN , 4FM9 , 4R1F , 5GWK , 5NNE , 6ZY5 , 6ZY6 , 6ZY7 , 6ZY8 , 8W50
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02518 HATPase_c 76 225 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Domain
PF00204 DNA_gyraseB 266 430 DNA gyrase B Domain
PF01751 Toprim 456 572 Toprim domain Family
PF16898 TOPRIM_C 573 711 C-terminal associated domain of TOPRIM Family
PF00521 DNA_topoisoIV 713 1172 DNA gyrase/topoisomerase IV, subunit A Family
PF08070 DTHCT 1430 1522 DTHCT (NUC029) region Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the tonsil, spleen, lymph node, thymus, skin, pancreas, testis, colon, kidney, liver, brain and lung (PubMed:9155056). Also found in high-grade lymphomas, squamous cell lung tumors and seminomas (PubMed:9155056). {ECO:0000
Sequence
MEVSPLQPVNENMQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQ
MWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWN
NGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE
TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSK
FKMQSLDKDIVALMV
RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC
LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKGGVAVKAHQVKNHM
WIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQ
VQLNKKCSAV
KHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK
YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMT
DQDQDGSHIKGLLINFIHHNWPSLLRHRFLEE
FITPIVKVSKNKQEMAFYSLPEFEEWKS
STPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQIDD
RKEWLTNFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDN
ERSIPSMVD
GLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNN
LNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYDDNQRVEPEW
YIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKNFKGTIE
ELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREY
HTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILR
DFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQR
GYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEK
KDELCRLRNEKEQELDTLKRKSPSDLWKEDLA
TFIEELEAVEAKEKQDEQVGLPGKGGKA
KGKKTQMAEVLPSPRGQRVIPRITIEMKAEAEKKNKKKIKNENTEGSPQEDGVELEGLKQ
RLEKKQKREPGTKTKKQTTLAFKPIKKGKKRNPWSDSESDRSSDESNFDVPPRETEPRRA
ATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASPPKTKTSPKLSNKELKPQKSVVSDLE
ADDVKGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKTAAKSQSSTSTTGAKKRAAPKG
TKRDPALNSGVSQKPDPAKTKNRRKRKPSTSDDSDSNFEKIVSKAVTSKKSKGESDDFHM
DFDSAVAPRAKSVRAKKPIKYL
EESDEDDLF
Sequence length 1531
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Platinum drug resistance   Transcription of E2F targets under negative control by DREAM complex
SUMOylation of DNA replication proteins
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Adenocarcinoma Adenoid Cystic Carcinoma rs121913530, rs886039394, rs121913474 16762588
Adrenocortical carcinoma Adrenocortical carcinoma rs121912656, rs28934874, rs121912662, rs786202525, rs121912664, rs397516435, rs121913343, rs587780070, rs121912666, rs55832599, rs587782144, rs587782272, rs587782529, rs587782620, rs587782664
View all (30 more)
23533247
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
22204715, 12006526, 11583189, 16234514
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
12006526, 16234514, 22204715, 11583189
Associations from Text Mining
Disease Name Relationship Type References
Abdominal Injuries Associate 36656469
Achalasia Addisonianism Alacrimia syndrome Associate 35792986
Acromegaly Associate 25692206
Acute Aortic Syndrome Associate 31721906
Adenocarcinoma Associate 19250538, 19670330, 20557373, 27814385, 28081737, 31180040, 8398710, 8780403
Adenocarcinoma of Lung Associate 28355294, 31074380, 32149105, 32323809, 32578582, 33126397, 33361736, 34304612, 35778520, 37985446, 8398710
Adenocarcinoma of Lung Stimulate 33398330
Adenoma Associate 8780403
Adenoma Pleomorphic Stimulate 19250538
Adenomatous Polyposis Coli Associate 20368985