TLR5 (toll like receptor 5)

Gene
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7100
Gene name Gene Name - the full gene name approved by the HGNC.
Toll like receptor 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TLR5
Synonyms (NCBI Gene) Gene synonyms aliases
MELIOS, SLE1, SLEB1, TIL3
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q41
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the toll-like receptor (TLR) family, which plays a fundamental role in pathogen recognition and activation of innate immune responses. These receptors recognize distinct pathogen-associated molecular patterns that are express
SNPs SNP information provided by dbSNP.
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Show/Hide all(2)
SNP ID Visualize variation Clinical significance Consequence
rs2072493 T>A,C Risk-factor Coding sequence variant, missense variant
rs5744168 G>A Risk-factor, protective Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Show/Hide all(62)
miRTarBase ID miRNA Experiments Reference
MIRT451800 hsa-miR-6783-5p PAR-CLIP 23592263
MIRT451799 hsa-miR-3185 PAR-CLIP 23592263
MIRT451798 hsa-miR-4645-3p PAR-CLIP 23592263
MIRT451797 hsa-miR-3184-5p PAR-CLIP 23592263
MIRT451796 hsa-miR-423-5p PAR-CLIP 23592263
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Show/Hide all(25)
GO ID Ontology Definition Evidence Reference
GO:0002224 Process Toll-like receptor signaling pathway IBA
GO:0002224 Process Toll-like receptor signaling pathway IEA
GO:0002376 Process Immune system process IEA
GO:0004888 Function Transmembrane signaling receptor activity IEA
GO:0005149 Function Interleukin-1 receptor binding IPI 12925853
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
MIM HGNC e!Ensembl
603031 11851 ENSG00000187554
Protein
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
UniProt ID O60602
Protein name Toll-like receptor 5 (Toll/interleukin-1 receptor-like protein 3)
Protein function Pattern recognition receptor (PRR) located on the cell surface that participates in the activation of innate immunity and inflammatory response (PubMed:11323673, PubMed:18490781). Recognizes small molecular motifs named pathogen-associated molec
PDB 3J0A , 8AR2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13855 LRR_8 79 → 131 Leucine rich repeat Repeat
PF13855 LRR_8 288 → 348 Leucine rich repeat Repeat
PF13855 LRR_8 491 → 538 Leucine rich repeat Repeat
PF01582 TIR 692 → 858 TIR domain Family
Tissue specificity TISSUE SPECIFICITY: Highly expressed on the basolateral surface of intestinal epithelia (PubMed:11489966). Expressed also in other cells such as lung epithelial cells (PubMed:11489966, PubMed:18490781). {ECO:0000269|PubMed:11489966, ECO:0000269|PubMed:184
Sequence 
MGDHLDLLLGVVLMAGPVFGIPSCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRT
VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH
LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN
QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV
DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV
FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP
KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK
INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL
GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV
LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT
IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTV
TKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYS
DQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCL
SDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKE
KEKKKDNNIPLQTVATIS
Sequence length 858
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
  KEGG   Reactome
  Toll-like receptor signaling pathway
Pathogenic Escherichia coli infection
Shigellosis
Salmonella infection
Legionellosis
Inflammatory bowel disease 		  Toll Like Receptor 5 (TLR5) Cascade
MyD88 deficiency (TLR5)
IRAK4 deficiency (TLR5)
MyD88 cascade initiated on plasma membrane
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Show/Hide Unknown Diseases (1)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Alzheimer disease Alzheimer's disease or family history of Alzheimer's disease N/A N/A GWAS
Show/Hide Text Mining Associations (109)
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Acute Kidney Injury Associate 37273234
Adenoma Associate 35636682
Agnosia Associate 28856441
Aicardi Syndrome Associate 26888781
Alzheimer Disease Associate 17652175
Appendicitis Associate 24336024
Arthritis Rheumatoid Associate 21179534, 22661088, 26440629, 31376255, 33482886, 37796367
Arthritis Rheumatoid Stimulate 31396542
Asthma Associate 29486764
Astrocytoma Associate 29912993