Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7025
Gene name Gene Name - the full gene name approved by the HGNC.
Nuclear receptor subfamily 2 group F member 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NR2F1
Synonyms (NCBI Gene) Gene synonyms aliases
BBOAS, BBSOAS, COUP-TFI, COUPTF1, EAR-3, EAR3, ERBAL3, SVP44, TCFCOUP1, TFCOUP1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BBSOAS
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q15
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a nuclear hormone receptor and transcriptional regulator. The encoded protein acts as a homodimer and binds to 5`-AGGTCA-3` repeats. Defects in this gene are a cause of Bosch-Boonstra optic atrophy syndrome (BBOAS). [pr
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs530910180 C>A,T Likely-pathogenic Coding sequence variant, synonymous variant, stop gained
rs587777274 G>C Pathogenic-likely-pathogenic Genic upstream transcript variant, coding sequence variant, missense variant, upstream transcript variant
rs587777275 C>A,T Pathogenic-likely-pathogenic Missense variant, genic upstream transcript variant, upstream transcript variant, synonymous variant, coding sequence variant
rs587777276 T>C Likely-pathogenic Coding sequence variant, missense variant
rs587777277 G>A Likely-pathogenic Genic upstream transcript variant, coding sequence variant, missense variant, upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT047264 hsa-miR-181b-5p CLASH 23622248
MIRT045568 hsa-miR-149-5p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
CREB1 Repression 15955695
ESRRA Repression 15955695
TWIST1 Activation 19051271
TWIST2 Activation 19051271
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA 21873635
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 10644740
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA 10644740
GO:0001227 Function DNA-binding transcription repressor activity, RNA polymerase II-specific IDA 10644740
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
132890 7975 ENSG00000175745
Protein
UniProt ID P10589
Protein name COUP transcription factor 1 (COUP-TF1) (COUP transcription factor I) (COUP-TF I) (Nuclear receptor subfamily 2 group F member 1) (V-erbA-related protein 3) (EAR-3)
Protein function Coup (chicken ovalbumin upstream promoter) transcription factor binds to the ovalbumin promoter and, in conjunction with another protein (S300-II) stimulates initiation of transcription. Binds to both direct repeats and palindromes of the 5'-AGG
PDB 2EBL
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00105 zf-C4 84 153 Zinc finger, C4 type (two domains) Domain
PF00104 Hormone_recep 204 394 Ligand-binding domain of nuclear hormone receptor Domain
Sequence
Sequence length 423
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Nuclear Receptor transcription pathway
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
11850205
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
11850205
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Marfan syndrome Mammary Carcinoma, Human rs137854456, rs137854457, rs267606796, rs137854458, rs137854459, rs137854460, rs137854470, rs137854471, rs267606797, rs137854461, rs137854462, rs137854463, rs869025419, rs137854464, rs137854465
View all (942 more)
11850205
Unknown
Disease term Disease name Evidence References Source
Optic Atrophy Bosch-Boonstra-Schaaf optic atrophy syndrome GenCC
Diabetes Diabetes GWAS
Associations from Text Mining
Disease Name Relationship Type References
Atrophy Associate 36702506
Autism Spectrum Disorder Associate 31729143
Autistic Disorder Associate 30628890, 39972940
Breast Neoplasms Stimulate 19154418, 24906407
Breast Neoplasms Associate 30322396, 31146704, 35083026, 35471456, 37575267
Carcinogenesis Associate 32784268
Carcinoma Hepatocellular Associate 29602203, 38052560
Carcinoma Intraductal Noninfiltrating Inhibit 35471456
Carcinoma Non Small Cell Lung Associate 32784268
Carcinoma Renal Cell Associate 37455213