Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	6942
Gene name	Transcription factor 20
Gene symbol	TCF20
Synonyms (NCBI Gene)	AR1DDVIBASPBPTCF-20
Chromosome	22
Chromosome location	22q13.2\|22q13.3
Summary	This gene encodes a transcription factor that recognizes the platelet-derived growth factor-responsive element in the matrix metalloproteinase 3 promoter. The encoded protein is thought to be a transcriptional coactivator, enhancing the activity of transc

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SNP ID	Visualize variation	Clinical significance	Consequence
rs751610641	G>A,C	Pathogenic	Coding sequence variant, missense variant, stop gained
rs777979354	->G	Pathogenic	Frameshift variant, coding sequence variant
rs869312678	CA>-	Pathogenic	Frameshift variant, coding sequence variant
rs1208949378	G>A,C	Pathogenic	Stop gained, synonymous variant, coding sequence variant
rs1555923508	G>-	Pathogenic	Coding sequence variant, frameshift variant
rs1555923822	->T	Pathogenic	Coding sequence variant, frameshift variant
rs1555924435	G>-	Pathogenic	Coding sequence variant, frameshift variant
rs1555925903	C>-	Pathogenic	Coding sequence variant, frameshift variant
rs1555926209	G>A	Pathogenic	Coding sequence variant, stop gained
rs1555926655	G>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569110700	G>A	Pathogenic, likely-pathogenic	Missense variant, coding sequence variant
rs1569143903	G>-	Likely-pathogenic	Coding sequence variant, frameshift variant
rs1569144264	G>A	Pathogenic	Coding sequence variant, stop gained
rs1569144348	CT>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569146455	T>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569146542	CT>-	Pathogenic, likely-pathogenic	Coding sequence variant, frameshift variant
rs1569146649	->T	Pathogenic	Coding sequence variant, frameshift variant
rs1569146993	->C	Pathogenic	Coding sequence variant, frameshift variant
rs1569147202	T>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569147315	->G	Pathogenic	Coding sequence variant, frameshift variant
rs1569149539	G>C	Pathogenic	Coding sequence variant, stop gained
rs1569150452	G>A	Pathogenic	Coding sequence variant, stop gained
rs1569150635	CA>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569150885	G>A	Pathogenic	Coding sequence variant, stop gained
rs1569151204	CA>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569151886	G>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569153066	G>A	Pathogenic	Coding sequence variant, stop gained
rs1569153159	CT>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569153915	G>-	Pathogenic	Coding sequence variant, frameshift variant
rs1569153986	->A	Pathogenic	Coding sequence variant, frameshift variant
rs1569154591	->TGGG	Pathogenic	Coding sequence variant, frameshift variant
rs1601592351	G>A	Pathogenic	Coding sequence variant, stop gained
rs1601593180	->ACCA	Pathogenic	Coding sequence variant, frameshift variant
rs1601597286	T>-	Pathogenic	Coding sequence variant, frameshift variant
rs1601598682	GTCA>-	Likely-pathogenic	Coding sequence variant, frameshift variant
rs1601602492	G>A	Pathogenic	Coding sequence variant, stop gained
rs1601603552	->T	Pathogenic	Coding sequence variant, stop gained

396

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miRTarBase ID	miRNA	Experiments	Reference
MIRT045691	hsa-miR-149-5p	CLASH	23622248
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710312	hsa-miR-6729-3p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710312	hsa-miR-6729-3p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710312	hsa-miR-6729-3p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT619450	hsa-miR-7154-5p	HITS-CLIP	23824327
MIRT619449	hsa-miR-433-3p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT619450	hsa-miR-7154-5p	HITS-CLIP	23824327
MIRT619449	hsa-miR-433-3p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710312	hsa-miR-6729-3p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710312	hsa-miR-6729-3p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT710317	hsa-miR-4779	HITS-CLIP	19536157
MIRT710316	hsa-miR-1178-5p	HITS-CLIP	19536157
MIRT710315	hsa-miR-188-5p	HITS-CLIP	19536157
MIRT710314	hsa-miR-6866-3p	HITS-CLIP	19536157
MIRT710313	hsa-miR-6847-5p	HITS-CLIP	19536157
MIRT710312	hsa-miR-6729-3p	HITS-CLIP	19536157
MIRT710311	hsa-miR-4780	HITS-CLIP	19536157
MIRT710310	hsa-miR-6780b-3p	HITS-CLIP	19536157
MIRT710309	hsa-miR-623	HITS-CLIP	19536157
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT619450	hsa-miR-7154-5p	HITS-CLIP	23824327
MIRT619449	hsa-miR-433-3p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT619450	hsa-miR-7154-5p	HITS-CLIP	23824327
MIRT619449	hsa-miR-433-3p	HITS-CLIP	23824327
MIRT614067	hsa-miR-8485	HITS-CLIP	23824327
MIRT614066	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT614065	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT614064	hsa-miR-1247-5p	HITS-CLIP	23824327
MIRT614063	hsa-miR-205-5p	HITS-CLIP	23824327
MIRT1416050	hsa-miR-1202	CLIP-seq
MIRT1416051	hsa-miR-1207-5p	CLIP-seq
MIRT1416052	hsa-miR-1264	CLIP-seq
MIRT1416053	hsa-miR-129-5p	CLIP-seq
MIRT1416054	hsa-miR-146a	CLIP-seq
MIRT1416055	hsa-miR-146b-5p	CLIP-seq
MIRT1416056	hsa-miR-1908	CLIP-seq
MIRT1416057	hsa-miR-1914	CLIP-seq
MIRT1416058	hsa-miR-193a-5p	CLIP-seq
MIRT1416059	hsa-miR-302a	CLIP-seq
MIRT1416060	hsa-miR-302b	CLIP-seq
MIRT1416061	hsa-miR-302c	CLIP-seq
MIRT1416062	hsa-miR-302d	CLIP-seq
MIRT1416063	hsa-miR-302e	CLIP-seq
MIRT1416064	hsa-miR-3074-5p	CLIP-seq
MIRT1416065	hsa-miR-3121-3p	CLIP-seq
MIRT1416066	hsa-miR-3124-3p	CLIP-seq
MIRT1416067	hsa-miR-3128	CLIP-seq
MIRT1416068	hsa-miR-3180	CLIP-seq
MIRT1416069	hsa-miR-3180-3p	CLIP-seq
MIRT1416070	hsa-miR-3180-5p	CLIP-seq
MIRT1416071	hsa-miR-3194-5p	CLIP-seq
MIRT1416072	hsa-miR-3196	CLIP-seq
MIRT1416073	hsa-miR-342-3p	CLIP-seq
MIRT1416074	hsa-miR-3659	CLIP-seq
MIRT1416075	hsa-miR-372	CLIP-seq
MIRT1416076	hsa-miR-373	CLIP-seq
MIRT1416077	hsa-miR-3972	CLIP-seq
MIRT1416078	hsa-miR-4267	CLIP-seq
MIRT1416079	hsa-miR-4436b-3p	CLIP-seq
MIRT1416080	hsa-miR-4477b	CLIP-seq
MIRT1416081	hsa-miR-4658	CLIP-seq
MIRT1416082	hsa-miR-4720-5p	CLIP-seq
MIRT1416083	hsa-miR-4729	CLIP-seq
MIRT1416084	hsa-miR-4758-5p	CLIP-seq
MIRT1416085	hsa-miR-4763-3p	CLIP-seq
MIRT1416086	hsa-miR-4799-3p	CLIP-seq
MIRT1416087	hsa-miR-486-3p	CLIP-seq
MIRT1416088	hsa-miR-520a-3p	CLIP-seq
MIRT1416089	hsa-miR-520a-5p	CLIP-seq
MIRT1416090	hsa-miR-520b	CLIP-seq
MIRT1416091	hsa-miR-520c-3p	CLIP-seq
MIRT1416092	hsa-miR-520d-3p	CLIP-seq
MIRT1416093	hsa-miR-520e	CLIP-seq
MIRT1416094	hsa-miR-525-5p	CLIP-seq
MIRT1416095	hsa-miR-548c-3p	CLIP-seq
MIRT1416096	hsa-miR-574-5p	CLIP-seq
MIRT1416097	hsa-miR-589	CLIP-seq
MIRT1416098	hsa-miR-597	CLIP-seq
MIRT1416099	hsa-miR-663	CLIP-seq
MIRT1416100	hsa-miR-668	CLIP-seq
MIRT1416101	hsa-miR-744	CLIP-seq
MIRT2124804	hsa-miR-3679-3p	CLIP-seq
MIRT2124805	hsa-miR-1254	CLIP-seq
MIRT1416054	hsa-miR-146a	CLIP-seq
MIRT1416055	hsa-miR-146b-5p	CLIP-seq
MIRT2124806	hsa-miR-3116	CLIP-seq
MIRT1416067	hsa-miR-3128	CLIP-seq
MIRT2124807	hsa-miR-3177-5p	CLIP-seq
MIRT1416074	hsa-miR-3659	CLIP-seq
MIRT2124808	hsa-miR-3690	CLIP-seq
MIRT2124809	hsa-miR-4269	CLIP-seq
MIRT2124810	hsa-miR-4535	CLIP-seq
MIRT2124811	hsa-miR-4650-5p	CLIP-seq
MIRT1416081	hsa-miR-4658	CLIP-seq
MIRT1416082	hsa-miR-4720-5p	CLIP-seq
MIRT1416084	hsa-miR-4758-5p	CLIP-seq
MIRT1416086	hsa-miR-4799-3p	CLIP-seq
MIRT2124812	hsa-miR-492	CLIP-seq
MIRT1416096	hsa-miR-574-5p	CLIP-seq
MIRT1416097	hsa-miR-589	CLIP-seq
MIRT2124813	hsa-miR-599	CLIP-seq
MIRT1416100	hsa-miR-668	CLIP-seq
MIRT2347222	hsa-miR-1197	CLIP-seq
MIRT1416051	hsa-miR-1207-5p	CLIP-seq
MIRT2347223	hsa-miR-1270	CLIP-seq
MIRT1416054	hsa-miR-146a	CLIP-seq
MIRT1416055	hsa-miR-146b-5p	CLIP-seq
MIRT1416056	hsa-miR-1908	CLIP-seq
MIRT1416059	hsa-miR-302a	CLIP-seq
MIRT1416060	hsa-miR-302b	CLIP-seq
MIRT1416061	hsa-miR-302c	CLIP-seq
MIRT1416062	hsa-miR-302d	CLIP-seq
MIRT1416063	hsa-miR-302e	CLIP-seq
MIRT2347224	hsa-miR-3177-3p	CLIP-seq
MIRT1416068	hsa-miR-3180	CLIP-seq
MIRT1416069	hsa-miR-3180-3p	CLIP-seq
MIRT2347225	hsa-miR-3186-3p	CLIP-seq
MIRT1416072	hsa-miR-3196	CLIP-seq
MIRT2347226	hsa-miR-3657	CLIP-seq
MIRT1416074	hsa-miR-3659	CLIP-seq
MIRT2347227	hsa-miR-3688-3p	CLIP-seq
MIRT1416075	hsa-miR-372	CLIP-seq
MIRT1416076	hsa-miR-373	CLIP-seq
MIRT2347228	hsa-miR-4261	CLIP-seq
MIRT2124809	hsa-miR-4269	CLIP-seq
MIRT2347229	hsa-miR-4436a	CLIP-seq
MIRT1416079	hsa-miR-4436b-3p	CLIP-seq
MIRT2347230	hsa-miR-4455	CLIP-seq
MIRT2347231	hsa-miR-4474-3p	CLIP-seq
MIRT1416080	hsa-miR-4477b	CLIP-seq
MIRT1416081	hsa-miR-4658	CLIP-seq
MIRT2347232	hsa-miR-4669	CLIP-seq
MIRT2347233	hsa-miR-4683	CLIP-seq
MIRT1416084	hsa-miR-4758-5p	CLIP-seq
MIRT1416085	hsa-miR-4763-3p	CLIP-seq
MIRT2347234	hsa-miR-4767	CLIP-seq
MIRT2347235	hsa-miR-4802-5p	CLIP-seq
MIRT1416087	hsa-miR-486-3p	CLIP-seq
MIRT2347236	hsa-miR-512-3p	CLIP-seq
MIRT1416088	hsa-miR-520a-3p	CLIP-seq
MIRT1416090	hsa-miR-520b	CLIP-seq
MIRT1416091	hsa-miR-520c-3p	CLIP-seq
MIRT1416092	hsa-miR-520d-3p	CLIP-seq
MIRT1416093	hsa-miR-520e	CLIP-seq
MIRT1416096	hsa-miR-574-5p	CLIP-seq
MIRT2347237	hsa-miR-587	CLIP-seq
MIRT1416097	hsa-miR-589	CLIP-seq
MIRT2347238	hsa-miR-592	CLIP-seq
MIRT2124813	hsa-miR-599	CLIP-seq
MIRT2347239	hsa-miR-604	CLIP-seq
MIRT2347240	hsa-miR-615-5p	CLIP-seq
MIRT2347241	hsa-miR-620	CLIP-seq
MIRT2347242	hsa-miR-644	CLIP-seq
MIRT2347243	hsa-miR-647	CLIP-seq
MIRT1416099	hsa-miR-663	CLIP-seq
MIRT1416100	hsa-miR-668	CLIP-seq
MIRT1416101	hsa-miR-744	CLIP-seq
MIRT2124805	hsa-miR-1254	CLIP-seq
MIRT1416056	hsa-miR-1908	CLIP-seq
MIRT2124806	hsa-miR-3116	CLIP-seq
MIRT1416068	hsa-miR-3180	CLIP-seq
MIRT1416069	hsa-miR-3180-3p	CLIP-seq
MIRT2347225	hsa-miR-3186-3p	CLIP-seq
MIRT1416072	hsa-miR-3196	CLIP-seq
MIRT2395590	hsa-miR-3622a-5p	CLIP-seq
MIRT2395591	hsa-miR-3622b-5p	CLIP-seq
MIRT2124808	hsa-miR-3690	CLIP-seq
MIRT2124809	hsa-miR-4269	CLIP-seq
MIRT2395592	hsa-miR-4286	CLIP-seq
MIRT2124810	hsa-miR-4535	CLIP-seq
MIRT2124811	hsa-miR-4650-5p	CLIP-seq
MIRT2347234	hsa-miR-4767	CLIP-seq
MIRT2124812	hsa-miR-492	CLIP-seq
MIRT1416099	hsa-miR-663	CLIP-seq
MIRT1416101	hsa-miR-744	CLIP-seq
MIRT2461239	hsa-miR-3619-3p	CLIP-seq
MIRT2466214	hsa-miR-339-5p	CLIP-seq
MIRT2461239	hsa-miR-3619-3p	CLIP-seq
MIRT2124804	hsa-miR-3679-3p	CLIP-seq
MIRT2466215	hsa-miR-4742-3p	CLIP-seq
MIRT2640061	hsa-miR-1	CLIP-seq
MIRT1416050	hsa-miR-1202	CLIP-seq
MIRT2640062	hsa-miR-1224-5p	CLIP-seq
MIRT2640063	hsa-miR-1248	CLIP-seq
MIRT2124805	hsa-miR-1254	CLIP-seq
MIRT1416053	hsa-miR-129-5p	CLIP-seq
MIRT2640064	hsa-miR-206	CLIP-seq
MIRT2640065	hsa-miR-22	CLIP-seq
MIRT2640066	hsa-miR-296-5p	CLIP-seq
MIRT2124806	hsa-miR-3116	CLIP-seq
MIRT2640067	hsa-miR-3127-3p	CLIP-seq
MIRT2640068	hsa-miR-3127-5p	CLIP-seq
MIRT1416067	hsa-miR-3128	CLIP-seq
MIRT2640069	hsa-miR-3145-3p	CLIP-seq
MIRT2640070	hsa-miR-3163	CLIP-seq
MIRT1416071	hsa-miR-3194-5p	CLIP-seq
MIRT2466214	hsa-miR-339-5p	CLIP-seq
MIRT2640071	hsa-miR-340	CLIP-seq
MIRT2640072	hsa-miR-3646	CLIP-seq
MIRT2640073	hsa-miR-3662	CLIP-seq
MIRT2640074	hsa-miR-3673	CLIP-seq
MIRT2124808	hsa-miR-3690	CLIP-seq
MIRT2640075	hsa-miR-3909	CLIP-seq
MIRT2640076	hsa-miR-3918	CLIP-seq
MIRT2640077	hsa-miR-3936	CLIP-seq
MIRT1416077	hsa-miR-3972	CLIP-seq
MIRT1416078	hsa-miR-4267	CLIP-seq
MIRT2395592	hsa-miR-4286	CLIP-seq
MIRT2640078	hsa-miR-4330	CLIP-seq
MIRT2640079	hsa-miR-4506	CLIP-seq
MIRT2124810	hsa-miR-4535	CLIP-seq
MIRT2124811	hsa-miR-4650-5p	CLIP-seq
MIRT2640080	hsa-miR-4663	CLIP-seq
MIRT2640081	hsa-miR-4694-3p	CLIP-seq
MIRT1416082	hsa-miR-4720-5p	CLIP-seq
MIRT2640082	hsa-miR-4751	CLIP-seq
MIRT2640083	hsa-miR-4753-5p	CLIP-seq
MIRT2640084	hsa-miR-4766-5p	CLIP-seq
MIRT1416086	hsa-miR-4799-3p	CLIP-seq
MIRT2124812	hsa-miR-492	CLIP-seq
MIRT2640085	hsa-miR-522	CLIP-seq
MIRT2640086	hsa-miR-548a-3p	CLIP-seq
MIRT1416095	hsa-miR-548c-3p	CLIP-seq
MIRT2640087	hsa-miR-548e	CLIP-seq
MIRT2640088	hsa-miR-548f	CLIP-seq
MIRT2640089	hsa-miR-548p	CLIP-seq
MIRT2640090	hsa-miR-613	CLIP-seq
MIRT2640091	hsa-miR-661	CLIP-seq
MIRT2640061	hsa-miR-1	CLIP-seq
MIRT1416050	hsa-miR-1202	CLIP-seq
MIRT2640062	hsa-miR-1224-5p	CLIP-seq
MIRT2640063	hsa-miR-1248	CLIP-seq
MIRT2124805	hsa-miR-1254	CLIP-seq
MIRT2640064	hsa-miR-206	CLIP-seq
MIRT2640065	hsa-miR-22	CLIP-seq
MIRT2640066	hsa-miR-296-5p	CLIP-seq
MIRT2124806	hsa-miR-3116	CLIP-seq
MIRT2640067	hsa-miR-3127-3p	CLIP-seq
MIRT2640068	hsa-miR-3127-5p	CLIP-seq
MIRT1416067	hsa-miR-3128	CLIP-seq
MIRT2640070	hsa-miR-3163	CLIP-seq
MIRT1416071	hsa-miR-3194-5p	CLIP-seq
MIRT2466214	hsa-miR-339-5p	CLIP-seq
MIRT2640071	hsa-miR-340	CLIP-seq
MIRT2640072	hsa-miR-3646	CLIP-seq
MIRT2640073	hsa-miR-3662	CLIP-seq
MIRT2640074	hsa-miR-3673	CLIP-seq
MIRT2124808	hsa-miR-3690	CLIP-seq
MIRT2640075	hsa-miR-3909	CLIP-seq
MIRT2640076	hsa-miR-3918	CLIP-seq
MIRT1416077	hsa-miR-3972	CLIP-seq
MIRT1416078	hsa-miR-4267	CLIP-seq
MIRT2395592	hsa-miR-4286	CLIP-seq
MIRT2124810	hsa-miR-4535	CLIP-seq
MIRT2124811	hsa-miR-4650-5p	CLIP-seq
MIRT2640080	hsa-miR-4663	CLIP-seq
MIRT1416082	hsa-miR-4720-5p	CLIP-seq
MIRT2640082	hsa-miR-4751	CLIP-seq
MIRT2640083	hsa-miR-4753-5p	CLIP-seq
MIRT2640084	hsa-miR-4766-5p	CLIP-seq
MIRT1416086	hsa-miR-4799-3p	CLIP-seq
MIRT2124812	hsa-miR-492	CLIP-seq
MIRT1416095	hsa-miR-548c-3p	CLIP-seq
MIRT2640089	hsa-miR-548p	CLIP-seq
MIRT2640090	hsa-miR-613	CLIP-seq
MIRT2640091	hsa-miR-661	CLIP-seq

Show/Hide all (12)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003677	Function	DNA binding	IEA
GO:0003723	Function	RNA binding	HDA	22658674
GO:0005515	Function	Protein binding	IPI	17913746
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	10995766
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0008270	Function	Zinc ion binding	IEA
GO:0016604	Component	Nuclear body	IDA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	NAS	10995766
GO:0046872	Function	Metal ion binding	IEA

MIM	HGNC	e!Ensembl
603107	11631	ENSG00000100207

Q9UGU0

Protein name

Transcription factor 20 (TCF-20) (Nuclear factor SPBP) (Protein AR1) (Stromelysin-1 PDGF-responsive element-binding protein) (SPRE-binding protein)

Protein function

Transcriptional activator that binds to the regulatory region of MMP3 and thereby controls stromelysin expression. It stimulates the activity of various transcriptional activators such as JUN, SP1, PAX6 and ETS1, suggesting a function as a coact

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF13771	zf-HC5HC2H	1855 → 1933		Domain

Tissue specificity

TISSUE SPECIFICITY: Expressed in most tissues, except in ovary and prostate. Isoform 1 is exclusively expressed in brain, heart and testis, and this form predominates in liver and kidney. Isoform 2 predominates in lung. {ECO:0000269|PubMed:10995766}.

Sequence

MQSFREQSSYHGNQQSYPQEVHGSSRLEEFSPRQAQMFQNFGGTGGSSGSSGSGSGGGRR
GAAAAAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSGPVQSYGP
PQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQV
QQLRQQLYQSHQPLPQATGQPASSSSHLQPMQRPSTLPSSAAGYQLRVGQFGQHYQSSAS
SSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNF
EQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQYNQPEVPVRSPMQF
HQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQGSVPMGSRNRILQLMPQLSP
TPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALT
PQKKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQ
STSSDTTYKGGASEKAGSSPAQGAQNEPPRLNASPAAREEATSPGAKDMPLSSDGNPKVN
EKTVGVIVSREAMTGRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG
GGSKGNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLRYSYKDSFGSAVPRN
VSGFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSRSTQEHQGMAG
SLEGTTRPNVLVSQTNELASRGLLNKSIGSLLENPHWGPWERKSSSTAPEMKQINLTDYP
IPRKFEIEPQSSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMSADTRIGRNDRL
NPTLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGDHCHPPSIKHES
YRGNASPGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSP
GRSRGPGGDPHHMNPHMTFSERANRSSLHTPFSPNSETLASAYHANTRAHAYGDPNAGLN
SQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDK
DGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKHGSQKLQESCWDLSRQTSPAKS
SGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRLPGQEDHSSQNPLIMRRRVRSF
ISPIPSKRQSQDVKNSSTEDKGRLLHSSKEGADKAFNSYAHLSHSQDIKSIPKRDSSKDL
PSPDSRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTV
TLDDILSLKSGPPEGGSVAVQDADIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGS
VDDKVKTETHAETVTAGKEPPGAMTSTTSQKPGSNQGRPDGSLGGTAPLIFPDSKNVPPV
GILAPEANPKAEEKENDTVTISPKQEGFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPP
PQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQP
LDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESK
ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPK
RATEMQSKVKVRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPR
SLSRGLPCKKAATEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCIL
WANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLL
HEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG

Sequence length

1960

Interactions

View interactions

247

Show/Hide Causal Diseases (21)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Attention deficit hyperactivity disorder	Pathogenic	rs1569110700	RCV000721924
Autism	Likely pathogenic; Pathogenic	rs1569149539, rs1569151204	RCV000770766 RCV000770767
Autism spectrum disorder	Pathogenic	rs2518222528	RCV003127328
Autistic behavior	Pathogenic	rs1569110700	RCV000721924
Craniosynostosis syndrome	Pathogenic	rs2147218338	RCV001526575
Developmental delay with variable intellectual impairment and behavioral abnormalities	Pathogenic; Likely pathogenic	rs2147195786, rs2147203200, rs2147215795, rs2147207137, rs2147214736, rs2147202143, rs2147193692, rs2147218495, rs2147212542, rs2147193598, rs2147221870, rs2147217152, rs2147209884, rs2147197034, rs2147217022 View all (38 more)	RCV001788533 RCV001788534 RCV001823785 RCV001706825 RCV001706844 RCV001706929 RCV001785054 RCV001787303 RCV001808241 RCV001823652 RCV001839156 RCV002226872 RCV002226940 RCV002246763 RCV002250938 RCV002250976 RCV002266420 RCV002273063 RCV002280213 RCV002302525 RCV002468808 RCV002471996 RCV003988890 RCV003328141 RCV003397177 RCV003444497 RCV003493290 RCV003883354 RCV003883372 RCV003983758 RCV003990808 RCV003992045 RCV003992064 RCV003992130 RCV004566381 RCV004595348 RCV000778086 RCV005410915 RCV004768627 RCV000778084 RCV003447559 RCV000778085 RCV003141735 RCV000778078 RCV000778079 RCV000778080 RCV000778081 RCV000778082 RCV000778083 RCV000995663 RCV001007901 RCV001252365 RCV001254046 RCV001261963
Failure to thrive	Pathogenic	rs1569146993	RCV000770765
Generalized hypotonia	Pathogenic	rs1569146993, rs1601592351	RCV000770765 RCV000786856
Global developmental delay	Pathogenic	rs2147200649	RCV001526695
Hypotelorism	Pathogenic	rs1601592351	RCV000786856
Hypotonia	Pathogenic	rs1569110700	RCV000721924
Intellectual disability	Likely pathogenic; Pathogenic	rs1569146542, rs1569146649, rs1601592351	RCV000850207 RCV000760175 RCV000786856
Mild intellectual disability	Likely pathogenic; Pathogenic	rs1569149539, rs1569151204	RCV000770766 RCV000770767
Moderate intellectual disability	Pathogenic	rs1569146993	RCV000770765
Myoclonus	Likely pathogenic; Pathogenic	rs1569149539	RCV000770766
Neurodevelopmental abnormality	Pathogenic	rs1555926655, rs1555926209, rs1569110700, rs1569150635, rs1569153159, rs751610641, rs777979354, rs1569150885, rs1569150452, rs1569144348, rs1569147315, rs1208949378, rs1569144264, rs1920931611	RCV000782112 RCV000782113 RCV000782120 RCV000782106 RCV000782107 RCV000782108 RCV000782110 RCV000782111 RCV000782114 RCV000782115 RCV000782116 RCV000782117 RCV000782119 RCV001264621
Neurodevelopmental delay	Pathogenic	rs2147207397, rs1555926209, rs1569110700	RCV002274380 RCV002274076 RCV000721924
Pectus excavatum	Pathogenic	rs1569146993	RCV000770765
Ptosis	Pathogenic	rs1569146993	RCV000770765
See cases	Pathogenic	rs2147214584, rs2518242171	RCV001420266 RCV002287738
TCF20-related disorder	Likely pathogenic; Pathogenic	rs2518231025, rs2518241727, rs1569146542	RCV003391255 RCV003391306 RCV000770764

Show/Hide Unknown Diseases (11)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Colon adenocarcinoma	Benign	rs188189383	RCV005926542
Colorectal cancer	Benign	rs34030679	RCV005918634
Developmental disorder	Likely benign	rs2147197672	RCV001843728
Familial cancer of breast	Conflicting classifications of pathogenicity	rs771336001	RCV005930444
Malignant lymphoma, large B-cell, diffuse	Benign	rs34030679	RCV005918633
Malignant tumor of esophagus	Benign; Likely benign	rs188189383, rs570476985	RCV005926543 RCV005931356
Sarcoma	Likely benign	rs149479605	RCV005903030
TCF20-related neurodevelopmental disorder	Uncertain significance	rs370476466	RCV002467381
Thymoma	Uncertain significance	rs773183893	RCV005930469
Thyroid cancer, nonmedullary, 1	Likely benign	rs149479605	RCV005903031
Uterine carcinosarcoma	Benign	rs34030679	RCV005918635

Show/Hide Text Mining Associations (26)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Agenesis of Corpus Callosum	Associate	36593604
Autism Spectrum Disorder	Associate	25228304, 27436265, 30739909, 30819258, 36593604
Autistic Disorder	Associate	25228304, 30739909, 30819258
Brain Diseases	Associate	30739909
Breast Neoplasms	Associate	15831449
Congenital Abnormalities	Associate	30819258
Depression Postpartum	Associate	27436265
Developmental Disabilities	Associate	27436265, 30739909, 31238879, 36593604
Diabetes Mellitus	Stimulate	25300295
Dwarfism Proportionate with Hip Dislocation	Associate	27436265
Exanthema	Associate	29378768
Heart Diseases	Associate	36593604
Hypersensitivity Delayed	Associate	29378768
Intellectual Disability	Associate	25228304, 27436265, 29378768, 30739909, 30819258, 36593604
Learning Disabilities	Associate	30739909
Movement Disorders	Associate	30819258
Muscle Hypotonia	Associate	27436265, 30819258
Neoplasms	Inhibit	25538261
Nervous System Diseases	Associate	30819258
Potocki Lupski syndrome	Associate	25228304, 30819258
Schizophrenia	Associate	28746715
Seizures	Associate	30739909
Simpson Golabi Behmel syndrome	Associate	27436265
Sleep Wake Disorders	Associate	30819258
Smith Magenis Syndrome	Associate	25228304, 30819258, 31014384
Telomeric 22q13 Monosomy Syndrome	Associate	38002941

TCF20 (transcription factor 20)