Gene Gene information from NCBI Gene database.
Entrez ID 6928
Gene name HNF1 homeobox B
Gene symbol HNF1B
Synonyms (NCBI Gene)
ADTKD3FJHNHNF-1-betaHNF-1BHNF1betaHNF2HPC11LF-B3LFB3MODY5RCADT2DTCF-2TCF2VHNF1
Chromosome 17
Chromosome location 17q12
Summary This gene encodes a member of the homeodomain-containing superfamily of transcription factors. The protein binds to DNA as either a homodimer, or a heterodimer with the related protein hepatocyte nuclear factor 1-alpha. The gene has been shown to function
SNPs SNP information provided by dbSNP.
16
SNP ID Visualize variation Clinical significance Consequence
rs141166864 A>G Conflicting-interpretations-of-pathogenicity, benign-likely-benign Intron variant
rs764042837 G>-,GG Likely-pathogenic, pathogenic Coding sequence variant, genic downstream transcript variant, frameshift variant, intron variant
rs886041820 ->G Pathogenic Coding sequence variant, frameshift variant
rs1555833071 TCGT>- Pathogenic Frameshift variant, coding sequence variant
rs1555833144 C>- Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
37
miRTarBase ID miRNA Experiments Reference
MIRT024651 hsa-miR-215-5p Microarray 19074876
MIRT026957 hsa-miR-192-5p Microarray 19074876
MIRT755748 hsa-miR-217 Luciferase reporter assayWestern blottingqRT-PCRFlow cytometry 35046625
MIRT1050546 hsa-miR-3157-5p CLIP-seq
MIRT1050547 hsa-miR-3665 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
74
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
189907 11630 ENSG00000275410
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P35680
Protein name Hepatocyte nuclear factor 1-beta (HNF-1-beta) (HNF-1B) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2) (Variant hepatic nuclear factor 1) (vHNF1)
Protein function Transcription factor that binds to the inverted palindrome 5'-GTTAATNATTAAC-3' (PubMed:17924661, PubMed:7900999). Binds to the FPC element in the cAMP regulatory unit of the PLAU gene (By similarity). Transcriptional activity is increased by coa
PDB 2DA6 , 2H8R , 5K9S
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04814 HNF-1_N 8 174 Hepatocyte nuclear factor 1 (HNF-1), N terminus Family
PF04812 HNF-1B_C 314 550 Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus Family
Sequence
Sequence length 557
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Maturity onset diabetes of the young  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
976
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal dominant medullary cystic kidney disease with or without hyperuricemia Pathogenic rs121918672 RCV001328308
Chromophobe renal cell carcinoma Pathogenic rs587776771 RCV000013483
Congenital anomaly of kidney and urinary tract Likely pathogenic; Pathogenic rs121918674 RCV001328307
HNF1B-related disorder Pathogenic; Likely pathogenic rs193922486, rs1568670479, rs2511701125, rs2511709958, rs2511808486, rs914046953, rs1568670481, rs2511801587, rs121918672, rs2511828535 RCV004753563
RCV003390678
RCV003402173
RCV003404563
RCV003982645
RCV004752990
RCV004753005
RCV003396364
RCV003411728
RCV003411729
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal dominant polycystic liver disease Uncertain significance; Conflicting classifications of pathogenicity rs748416956, rs140562402, rs147816724, rs193922493 RCV001844931
RCV001844814
RCV001844831
RCV001844804
Diabetes mellitus Uncertain significance rs986828416 RCV005250324
Monogenic diabetes Conflicting classifications of pathogenicity; Benign; Uncertain significance; Uncertain risk allele rs140562402, rs8068014, rs147816724, rs375644184, rs757452269, rs1555833051, rs1352906725, rs2032897142 RCV001174365
RCV000445437
RCV000664148
RCV000664145
RCV000664146
RCV000664147
RCV001174363
RCV001174364
Ovarian cancer Benign; Conflicting classifications of pathogenicity rs2511852824, rs121918673 RCV003154697
RCV003153303
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Pain Associate 37052076
Abidi X linked mental retardation syndrome Associate 28737528
Acute Kidney Injury Associate 35038894, 39696008
Adenocarcinoma Associate 25884453
Adenocarcinoma Clear Cell Stimulate 17270029
Adenocarcinoma Clear Cell Associate 17270029
Adenocarcinoma Mucinous Associate 29851704, 30258209
Adenoma Associate 21438902
Alkalosis Associate 34931465
Anemia Aplastic Associate 11085914