Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6928
Gene name Gene Name - the full gene name approved by the HGNC.
HNF1 homeobox B
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HNF1B
Synonyms (NCBI Gene) Gene synonyms aliases
ADTKD3, FJHN, HNF-1-beta, HNF-1B, HNF1beta, HNF2, HPC11, LF-B3, LFB3, MODY5, RCAD, T2D, TCF-2, TCF2, VHNF1
Chromosome Chromosome number
17
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q12
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the homeodomain-containing superfamily of transcription factors. The protein binds to DNA as either a homodimer, or a heterodimer with the related protein hepatocyte nuclear factor 1-alpha. The gene has been shown to function
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs141166864 A>G Conflicting-interpretations-of-pathogenicity, benign-likely-benign Intron variant
rs764042837 G>-,GG Likely-pathogenic, pathogenic Coding sequence variant, genic downstream transcript variant, frameshift variant, intron variant
rs886041820 ->G Pathogenic Coding sequence variant, frameshift variant
rs1555833071 TCGT>- Pathogenic Frameshift variant, coding sequence variant
rs1555833144 C>- Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT024651 hsa-miR-215-5p Microarray 19074876
MIRT026957 hsa-miR-192-5p Microarray 19074876
MIRT755748 hsa-miR-217 Luciferase reporter assay, Western blotting, qRT-PCR, Flow cytometry 35046625
MIRT1050546 hsa-miR-3157-5p CLIP-seq
MIRT1050547 hsa-miR-3665 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
189907 11630 ENSG00000275410
Protein
UniProt ID P35680
Protein name Hepatocyte nuclear factor 1-beta (HNF-1-beta) (HNF-1B) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2) (Variant hepatic nuclear factor 1) (vHNF1)
Protein function Transcription factor that binds to the inverted palindrome 5'-GTTAATNATTAAC-3' (PubMed:17924661, PubMed:7900999). Binds to the FPC element in the cAMP regulatory unit of the PLAU gene (By similarity). Transcriptional activity is increased by coa
PDB 2DA6 , 2H8R , 5K9S
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04814 HNF-1_N 8 174 Hepatocyte nuclear factor 1 (HNF-1), N terminus Family
PF04812 HNF-1B_C 314 550 Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus Family
Sequence
Sequence length 557
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Maturity onset diabetes of the young  
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Diabetes Mellitus Type 2 diabetes mellitus rs1598842892 N/A
Mason type diabetes maturity onset diabetes mellitus in young rs1598809697, rs1598809747, rs886041820, rs1598840773, rs1598848672, rs1555833071, rs1598840795, rs1598854261, rs1555833144, rs1598841082, rs1598854747, rs1598842886, rs1598840996, rs1598806177 N/A
Renal Cysts And Diabetes Syndrome renal cysts and diabetes syndrome rs1598842892, rs1598809697, rs1598809747, rs1057519371, rs886041820, rs1598840773, rs1598848672, rs1555833071, rs1598840795, rs1598854261, rs1555833144, rs1598841082, rs1598854747, rs764042837, rs1598842886
View all (2 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Cholelithiasis Cholelithiasis N/A N/A GWAS
Diabetes Type 2 diabetes (adjusted for BMI), Type ii diabetes, Type 2 diabetes, Type 2 diabetes (PheCode 250.2), Diabetes N/A N/A GWAS
Endometrial Cancer Uterine cancer N/A N/A GWAS
Frontotemporal dementia Frontotemporal dementia N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Pain Associate 37052076
Abidi X linked mental retardation syndrome Associate 28737528
Acute Kidney Injury Associate 35038894, 39696008
Adenocarcinoma Associate 25884453
Adenocarcinoma Clear Cell Stimulate 17270029
Adenocarcinoma Clear Cell Associate 17270029
Adenocarcinoma Mucinous Associate 29851704, 30258209
Adenoma Associate 21438902
Alkalosis Associate 34931465
Anemia Aplastic Associate 11085914