Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6927
Gene name Gene Name - the full gene name approved by the HGNC.
HNF1 homeobox A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HNF1A
Synonyms (NCBI Gene) Gene synonyms aliases
HNF-1-alpha, HNF-1A, HNF1, HNF1alpha, HNF4A, IDDM20, LFB1, MODY3, TCF-1, TCF1
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q24.31
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a transcription factor required for the expression of several liver-specific genes. The encoded protein functions as a homodimer and binds to the inverted palindrome 5`-GTTAATNATTAAC-3`. Defects in this gene are a cause
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1169288 A>C,T Benign, risk-factor Coding sequence variant, missense variant
rs1169305 A>C,G,T Benign, not-provided, pathogenic Coding sequence variant, missense variant
rs137853236 C>T Pathogenic Coding sequence variant, missense variant
rs137853237 A>G Pathogenic Coding sequence variant, missense variant
rs137853238 G>A Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004646 hsa-miR-194-5p Review 20029422
MIRT044838 hsa-miR-320a CLASH 23622248
MIRT437966 hsa-miR-15b-5p qRT-PCR, Luciferase reporter assay, Western blot 24705650
MIRT437966 hsa-miR-15b-5p qRT-PCR, Luciferase reporter assay, Western blot 24705650
MIRT437966 hsa-miR-15b-5p qRT-PCR, Luciferase reporter assay, Western blot 24705650
Transcription factors
Transcription factor Regulation Reference
HNF4A Unknown 9792724
RXRA Unknown 11027556
ZHX2 Unknown 18194454
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IDA 12453420, 15961790
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
142410 11621 ENSG00000135100
Protein
UniProt ID P20823
Protein name Hepatocyte nuclear factor 1-alpha (HNF-1-alpha) (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1)
Protein function Transcriptional activator that regulates the tissue specific expression of multiple genes, especially in pancreatic islet cells and in liver (By similarity). Binds to the inverted palindrome 5'-GTTAATNATTAAC-3' (PubMed:10966642, PubMed:12453420)
PDB 1IC8 , 2GYP , 8PI7 , 8PI8 , 8PI9 , 8PIA
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04814 HNF-1_N 8 168 Hepatocyte nuclear factor 1 (HNF-1), N terminus Family
PF04812 HNF-1B_C 282 540 Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus Family
PF04813 HNF-1A_C 542 630 Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus Family
Tissue specificity TISSUE SPECIFICITY: Liver.
Sequence
Sequence length 631
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Maturity onset diabetes of the young  
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Diabetes Mellitus Diabetes mellitus type 1, Maturity-onset diabetes of the young type 3, diabetes mellitus, Type 1 diabetes mellitus 20 rs587780357, rs193922588, rs765432081, rs2135847417, rs587776825, rs137853238, rs137853243, rs386134267, rs1565886545, rs193922576, rs1555212359, rs1057520291, rs1057520504, rs193922604, rs1593060859
View all (35 more)
N/A
Hyperinsulinism hyperinsulinism due to hnf1a deficiency rs137853245 N/A
Mason type diabetes maturity onset diabetes mellitus in young rs137853237, rs1593054210, rs1555212749, rs1565885935, rs1463923467, rs1555211426, rs193922596, rs193922600, rs1565887211, rs1555211904, rs1555212248, rs587780357, rs1592897526, rs1555212363, rs1565883507
View all (54 more)
N/A
Monogenic Diabetes monogenic diabetes rs1555212248, rs1057520291, rs193922588, rs1555211436, rs1057520504, rs193922600, rs1555211975, rs137853238, rs587780357, rs771108132, rs1565883507, rs137853243, rs386134267, rs765432081, rs193922576
View all (45 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Asthma Asthma onset (childhood vs adult), Asthma, Asthma (age of onset), Asthma (childhood onset), Atopic asthma N/A N/A GWAS
Breast cancer Breast cancer (triple negative or BRCA1-positive) N/A N/A GWAS
Breast Carcinoma breast carcinoma N/A N/A ClinVar
Cholecystitis Cholecystitis N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 21677039
Adenocarcinoma Associate 24000294, 33024199, 33094962
Adenoma Associate 17049664, 34232602
Adenoma Inhibit 27015136
Adenoma Liver Cell Associate 16496320, 17049664, 17379603, 20393147, 21975049, 23707370, 26776850, 26961851, 26997447, 27197745, 29256857, 30121369, 31483937, 31570768
Adenomatosis Pulmonary Associate 18720549
Adenomatous Polyposis Coli Associate 17049664
alpha 1 Antitrypsin Deficiency Associate 26174136
alpha Fetoprotein Deficiency Associate 31915469
Anodontia Associate 27197745