Gene Gene information from NCBI Gene database.
Entrez ID 6804
Gene name Syntaxin 1A
Gene symbol STX1A
Synonyms (NCBI Gene)
HPC-1P35-1STX1SYN1A
Chromosome 7
Chromosome location 7q11.23
Summary This gene encodes a member of the syntaxin superfamily. Syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins possess a single C-terminal transmembrane domain, a SNARE
miRNA miRNA information provided by mirtarbase database.
212
miRTarBase ID miRNA Experiments Reference
MIRT006305 hsa-miR-34a-5p Luciferase reporter assayWestern blot 22160687
MIRT006305 hsa-miR-34a-5p Luciferase reporter assayWestern blot 22160687
MIRT006305 hsa-miR-34a-5p Luciferase reporter assayWestern blot 22160687
MIRT018783 hsa-miR-335-5p Microarray 18185580
MIRT030051 hsa-miR-26b-5p Microarray 19088304
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
83
GO ID Ontology Definition Evidence Reference
GO:0000149 Function SNARE binding IBA
GO:0000149 Function SNARE binding IEA
GO:0001956 Process Positive regulation of neurotransmitter secretion IEA
GO:0005484 Function SNAP receptor activity IBA
GO:0005484 Function SNAP receptor activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
186590 11433 ENSG00000106089
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q16623
Protein name Syntaxin-1A (Neuron-specific antigen HPC-1)
Protein function Plays an essential role in hormone and neurotransmitter calcium-dependent exocytosis and endocytosis (PubMed:26635000). Part of the SNARE (Soluble NSF Attachment Receptor) complex composed of SNAP25, STX1A and VAMP2 which mediates the fusion of
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00804 Syntaxin 30 227 Syntaxin Domain
PF05739 SNARE 228 280 SNARE domain Family
Tissue specificity TISSUE SPECIFICITY: [Isoform 1]: Highly expressed in embryonic spinal cord and ganglia and in adult cerebellum and cerebral cortex. {ECO:0000269|PubMed:10644452}.; TISSUE SPECIFICITY: [Isoform 2]: Expressed in heart, liver, fat, skeletal muscle, kidney an
Sequence
Sequence length 288
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  SNARE interactions in vesicular transport
Synaptic vesicle cycle
Insulin secretion
Huntington disease
Pathways of neurodegeneration - multiple diseases
Amphetamine addiction
  Serotonin Neurotransmitter Release Cycle
Norepinephrine Neurotransmitter Release Cycle
Glutamate Neurotransmitter Release Cycle
Dopamine Neurotransmitter Release Cycle
Acetylcholine Neurotransmitter Release Cycle
Other interleukin signaling
Toxicity of botulinum toxin type C (BoNT/C)
LGI-ADAM interactions
GABA synthesis, release, reuptake and degradation
Insertion of tail-anchored proteins into the endoplasmic reticulum membrane
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
19
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autism Pathogenic; Likely pathogenic rs2116737208, rs2116730968, rs2116724168 RCV002226571
RCV002226573
RCV002226575
Intellectual disability Pathogenic; Likely pathogenic rs2116737208, rs2116731315, rs2116730968, rs2116730958, rs2116724168, rs200456346 RCV002226571
RCV002226572
RCV002226573
RCV002226574
RCV002226575
RCV002226530
Neurodevelopmental abnormality Likely pathogenic rs200456346 RCV001264639
Seizure Likely pathogenic rs2116731315, rs2116730958, rs200456346 RCV002226572
RCV002226574
RCV002226530
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
STX1A-related disorder Benign; Likely benign rs2229854, rs782110427, rs2484575530, rs372364411 RCV003973817
RCV003927350
RCV003959565
RCV003969222
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Astrocytoma Associate 12586365, 15037634
Attention Deficit Disorder with Hyperactivity Associate 22773342
Autistic Disorder Associate 18593506, 36564538
Brain Damage Chronic Associate 36008522
Brain Diseases Associate 36564538
Brain Ischemia Associate 36008522
Breast Neoplasms Associate 26673618
Carcinoma Neuroendocrine Associate 32059362
Cerebral Infarction Stimulate 36008522
Coronary Artery Disease Associate 31192914