Gene Gene information from NCBI Gene database.
Entrez ID 6792
Gene name Cyclin dependent kinase like 5
Gene symbol CDKL5
Synonyms (NCBI Gene)
CFAP247DEE2EIEE2ISSXSTK9
Chromosome X
Chromosome location Xp22.13
Summary This gene is a member of Ser/Thr protein kinase family and encodes a phosphorylated protein with protein kinase activity. Mutations in this gene have been associated with X-linked infantile spasm syndrome (ISSX), also known as X-linked West syndrome, and
SNPs SNP information provided by dbSNP.
267
SNP ID Visualize variation Clinical significance Consequence
rs17857094 C>T Pathogenic Coding sequence variant, stop gained
rs61749700 A>T Pathogenic Coding sequence variant, missense variant
rs61749704 C>T Pathogenic Coding sequence variant, missense variant
rs61750250 TTGGACCCAG>- Pathogenic Coding sequence variant, frameshift variant
rs61753251 CT>- Pathogenic, pathogenic-likely-pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT046657 hsa-miR-222-3p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
MECP2 Unknown 16330482
MEF2C Unknown 20513142
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
45
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001764 Process Neuron migration ISS
GO:0004672 Function Protein kinase activity IBA
GO:0004672 Function Protein kinase activity IDA 16935860
GO:0004672 Function Protein kinase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300203 11411 ENSG00000008086
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O76039
Protein name Cyclin-dependent kinase-like 5 (EC 2.7.11.22) (Serine/threonine-protein kinase 9)
Protein function Mediates phosphorylation of MECP2 (PubMed:15917271, PubMed:16935860). May regulate ciliogenesis (PubMed:29420175).
PDB 4BGQ , 8CIE
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00069 Pkinase 13 297 Protein kinase domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in brain, lung, kidney, prostate, ovary, placenta, pancreas and testis.; TISSUE SPECIFICITY: [Isoform 2]: Predominant transcript in brain. {ECO:0000269|PubMed:21748340}.
Sequence
MKIPNIGNVMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRE
LKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLI
KAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVATRWYRSP
ELLLGAPYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYS
NPRFHGLRFPAVNHPQSLERRYLGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTF
QTQ
RLLDRSPSRSAKRKPYHVESSTLSNRNQAGKSTALQSHHRSNSKDIQNLSVGLPRADEGL
PANESFLNGNLAGASLSPLHTKTYQASSQPGSTSKDLTNNNIPHLLSPKEAKSKTEFDFN
IDPKPSEGPGTKYLKSNSRSQQNRHSFMESSQSKAGTLQPNEKQSRHSYIDTIPQSSRSP
SYRTKAKSHGALSDSKSVSNLSEARAQIAEPSTSRYFPSSCLDLNSPTSPTPTRHSDTRT
LLSPSGRNNRNEGTLDSRRTTTRHSKTMEELKLPEHMDSSHSHSLSAPHESFSYGLGYTS
PFSSQQRPHRHSMYVTRDKVRAKGLDGSLSIGQGMAARANSLQLLSPQPGEQLPPEMTVA
RSSVKETSREGTSSFHTRQKSEGGVYHDPHSDDGTAPKENRHLYNDPVPRRVGSFYRVPS
PRPDNSFHENNVSTRVSSLPSESSSGTNHSKRQPAFDPWKSPENISHSEQLKEKEKQGFF
RSMKKKKKKSQTVPNSDSPDLLTLQKSIHSASTPSSRPKEWRPEKISDLQTQSQPLKSLR
KLLHLSSASNHPASSDPRFQPLTAQQTKNSFSEIRIHPLSQASGGSSNIRQEPAPKGRPA
LQLPGQMDPGWHVSSVTRSATEGPSYSEQLGAKSGPNGHPYNRTNRSRMPNLNDLKETAL
Sequence length 960
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2298
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormality of the nervous system Likely pathogenic rs1602280455 RCV001814246
Angelman syndrome Pathogenic rs267608546 RCV000133391
Angelman syndrome-like Pathogenic; Likely pathogenic rs267606715, rs1925577525, rs1925423909, rs1925492354, rs1925493252, rs2147139605, rs2147139522, rs2147139669, rs2147143992, rs267608436, rs267608490, rs2147145565, rs267608493, rs2147145614, rs2147160237
View all (164 more)
RCV001201864
RCV001320410
RCV001351068
RCV001341921
RCV001340524
RCV001360583
RCV001378614
RCV001378902
RCV001378443
RCV001385375
RCV001385704
RCV001382473
RCV001383655
RCV001386231
RCV001385428
RCV001385749
RCV001383236
RCV001385376
RCV001389577
RCV001382269
RCV001926048
RCV001866346
RCV002037703
RCV001899898
RCV001881738
RCV001975877
RCV001889786
RCV002045366
RCV002022681
RCV001926187
RCV002007237
RCV002037859
RCV001993155
RCV002000131
RCV001993388
RCV001972460
RCV001946820
RCV001972378
RCV001896737
RCV001942309
RCV002046020
RCV001972562
RCV001941208
RCV001959030
RCV002042241
RCV001909294
RCV001940015
RCV001068312
RCV001244788
RCV000694251
RCV001385702
RCV001849963
RCV003764876
RCV000694825
RCV000229531
RCV001071921
RCV001849964
RCV003764877
RCV000544362
RCV000812193
RCV002515935
RCV000640488
RCV001046060
RCV001385706
RCV002512557
RCV001215542
RCV002515944
RCV001386312
RCV002515946
RCV005213629
RCV002299296
RCV003064672
RCV003059895
RCV003050590
RCV001850412
RCV003765059
RCV001850413
RCV001385705
RCV003765058
RCV000536060
RCV003085978
RCV003776058
RCV003112433
RCV001857739
RCV002815464
RCV002806805
RCV002811060
RCV002825693
RCV002829253
RCV002875812
RCV002858399
RCV002894642
RCV002872759
RCV002894386
RCV002895343
RCV003023061
RCV003023529
RCV003038962
RCV003055005
RCV003051655
RCV003055763
RCV003045107
RCV003764559
RCV000699210
RCV001385703
RCV005222867
RCV001379966
RCV003783753
RCV003781592
RCV003782973
RCV003779463
RCV003807749
RCV003807977
RCV003808206
RCV003806376
RCV003804532
RCV003805464
RCV003803997
RCV003805325
RCV003801287
RCV003802609
RCV003802737
RCV003800278
RCV003808462
RCV003808679
RCV003800719
RCV003800753
RCV003801963
RCV003802065
RCV003817697
RCV003801724
RCV003809950
RCV003810032
RCV003802554
RCV003812299
RCV003810298
RCV001035195
RCV000807507
RCV000464248
RCV000474894
RCV001244046
RCV003766891
RCV000560461
RCV000541690
RCV000535244
RCV000548702
RCV001047013
RCV002530871
RCV000640485
RCV000640483
RCV000640490
RCV000640491
RCV001229805
RCV000705991
RCV000687369
RCV000699805
RCV000698605
RCV000694793
RCV000816804
RCV000815876
RCV000808221
RCV000819555
RCV000803646
RCV000797135
RCV001371944
RCV002550618
RCV001860565
RCV003769414
RCV001047599
RCV001063549
RCV001067845
RCV001062625
RCV001058028
RCV001041809
RCV001048608
RCV001039543
RCV001062137
RCV001042645
RCV001063201
RCV001035473
RCV001070396
RCV001301919
RCV001204295
RCV001218207
RCV001218250
RCV001230939
RCV001227068
RCV001246449
RCV001244296
RCV001237801
RCV001303322
Atypical Rett syndrome Pathogenic; Likely pathogenic rs267608623, rs267608433, rs267608643, rs267608395, rs267608644, rs62653623, rs62643608, rs267608646, rs62641235, rs62643614, rs61753251, rs267608453, rs267608468, rs267608493, rs267608505
View all (25 more)
RCV000133321
RCV000133326
RCV000169916
RCV000169917
RCV000133329
RCV000170010
RCV000170012
RCV000133334
RCV000133344
RCV000133348
RCV000169918
RCV000133365
RCV000169914
RCV000169986
RCV000133380
RCV000133385
RCV000169999
RCV000170016
RCV000169983
RCV000170044
RCV000170037
RCV000170038
RCV000170045
RCV000170048
RCV000170050
RCV000169988
RCV000170053
RCV000170056
RCV000169993
RCV000169995
RCV000169996
RCV000169997
RCV000170001
RCV000170014
RCV000170015
RCV000170034
RCV000133370
RCV000133372
RCV000133352
RCV000133317
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal cerebral morphology Uncertain significance rs587783157 RCV002275896
Acute myeloid leukemia Benign rs73636684 RCV005916751
Craniosynostosis syndrome Benign; Likely benign rs61753977 RCV005621883
Familial cancer of breast Benign rs73636684 RCV005916750
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 22521361
Acute Kidney Injury Associate 33044867
Angelman Syndrome Associate 15499549, 19241098
Aphasia Associate 31205075
Apnea Associate 23151060
Autism Spectrum Disorder Associate 32722525, 37490689
Autistic Disorder Associate 16611748, 19241098, 22521361, 25315662, 27824329
Body Dysmorphic Disorders Associate 26993267
Brain Diseases Associate 18266744, 19780792, 21309761, 21750574, 21770923, 22872100, 23756444, 24564546, 25266480, 27187038, 29190809, 31313283, 32111237, 37490689, 37701975
Breast Neoplasms Associate 35667653