Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6688
Gene name Gene Name - the full gene name approved by the HGNC.
Spi-1 proto-oncogene
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SPI1
Synonyms (NCBI Gene) Gene synonyms aliases
AGM10, OF, PU.1, SFPI1, SPI-1, SPI-A
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11p11.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an ETS-domain transcription factor that activates gene expression during myeloid and B-lymphoid cell development. The nuclear protein binds to a purine-rich sequence known as the PU-box found near the promoters of target genes, and regul
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004282 hsa-miR-155-5p Luciferase reporter assay 19386588
MIRT004282 hsa-miR-155-5p Luciferase reporter assay 19386588
MIRT004629 hsa-miR-342-3p Review 20026422
MIRT004827 hsa-miR-569 Luciferase reporter assay 21360505
MIRT005724 hsa-miR-34a-5p Luciferase reporter assay 20598588
Transcription factors
Transcription factor Regulation Reference
CEBPA Unknown 24429361
CEBPE Repression 12202480
FOS Repression 9988737
GATA1 Repression 10753833
GATA2 Repression 19620289
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 28362429
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0000122 Process Negative regulation of transcription by RNA polymerase II TAS 10867017
GO:0000785 Component Chromatin IDA 15304486
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
165170 11241 ENSG00000066336
Protein
UniProt ID P17947
Protein name Transcription factor PU.1 (31 kDa-transforming protein)
Protein function Pioneer transcription factor, which controls hematopoietic cell fate by decompacting stem cell heterochromatin and allowing other transcription factors to enter otherwise inaccessible genomic sites. Once in open chromatin, can directly control g
PDB 8E3K , 8E3R , 8E4H , 8E5Y , 8EBH , 8EE9 , 8EJ6 , 8EJ8 , 8EK3 , 8EK8 , 8EKJ , 8EKU , 8EKV , 8EKZ , 8EM9 , 8EMD , 8ENG , 8EO1 , 8EO4 , 8EQG , 8EQK , 8EQL , 8T9U , 8UFF , 8UFK , 8UFZ , 8UHK , 8V9N , 8VDH , 8VDI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00178 Ets 171 253 Ets-domain Domain
Tissue specificity TISSUE SPECIFICITY: In the bone marrow, concentrated in hematopoietic stem cell, lymphoid progenitor, myeloid lineage (granulocyte macrophage progenitors, classical dendritic cells, monocytes) and B-cell clusters. Among B-cells, predominantly expressed in
Sequence
MLQACKMEGFPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHHVHS
EFESFAENNFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHPSLGHQVSYLPRMCLQ
YPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLYQFLLDLL
RSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGE
VKKVKKKLTYQFS
GEVLGRGGLAERRHPPH
Sequence length 270
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Osteoclast differentiation
Human T-cell leukemia virus 1 infection
Pathways in cancer
Transcriptional misregulation in cancer
Acute myeloid leukemia
  Transcriptional regulation of granulopoiesis
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Agammaglobulinemia Agammaglobulinemia 10, autosomal dominant, agammaglobulinemia rs2095906547, rs2095906404, rs1565638431 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Alzheimer disease Alzheimer's disease or family history of Alzheimer's disease N/A N/A GWAS
Hypertension Hypertension N/A N/A GWAS
Insomnia Insomnia N/A N/A GWAS
Kidney Disease Chronic kidney disease N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 16938118
Acrocephalosyndactylia Stimulate 24453425
Adenocarcinoma of Lung Associate 28388536, 35675043
Agammaglobulinemia Associate 33951726
Alcoholism Associate 34417470
Alzheimer Disease Associate 29482603, 30124174, 32152295, 33712570, 34103633, 35253752, 35383839, 35436980, 35715361, 35931864, 36550123, 37253165, 37735671, 37774680, 40037709
Amyotrophic Lateral Sclerosis 2 Juvenile Associate 30224357
Aortic Aneurysm Abdominal Associate 34814367
Arthritis Stimulate 29979448
Arthritis Rheumatoid Associate 24213554, 27671860, 30123050, 31785408