Gene Gene information from NCBI Gene database.
Entrez ID 6647
Gene name Superoxide dismutase 1
Gene symbol SOD1
Synonyms (NCBI Gene)
ALSALS1HEL-S-44IPOASODSTAHPhSod1homodimer
Chromosome 21
Chromosome location 21q22.11
Summary The protein encoded by this gene binds copper and zinc ions and is one of two isozymes responsible for destroying free superoxide radicals in the body. The encoded isozyme is a soluble cytoplasmic protein, acting as a homodimer to convert naturally-occuri
SNPs SNP information provided by dbSNP.
30
SNP ID Visualize variation Clinical significance Consequence
rs11556620 A>G,T Likely-pathogenic Missense variant, coding sequence variant
rs74315452 T>C Pathogenic Missense variant, coding sequence variant
rs76731700 G>A,T Pathogenic, likely-pathogenic Missense variant, coding sequence variant, stop gained
rs80265967 A>C,T Pathogenic, conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, coding sequence variant
rs121912431 G>A,C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
164
miRTarBase ID miRNA Experiments Reference
MIRT000992 hsa-miR-377-3p Luciferase reporter assayWestern blot 18716028
MIRT000992 hsa-miR-377-3p Luciferase reporter assay 21203553
MIRT048056 hsa-miR-197-3p CLASH 23622248
MIRT043913 hsa-miR-378a-3p CLASH 23622248
MIRT734538 hsa-miR-6823-5p Western blottingqRT-PCR 33649776
Transcription factors Transcription factors information provided by TRRUST V2 database.
9
Transcription factor Regulation Reference
CEBPD Activation 20385105
EGR1 Activation 9867871
KLF4 Repression 23370975
MSX2 Activation 22824755
MTF1 Activation 15378601
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
158
GO ID Ontology Definition Evidence Reference
GO:0000302 Process Response to reactive oxygen species IEA
GO:0000303 Process Response to superoxide IDA 16790527
GO:0000303 Process Response to superoxide IEA
GO:0001541 Process Ovarian follicle development IEA
GO:0001541 Process Ovarian follicle development ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
147450 11179 ENSG00000142168
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P00441
Protein name Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) (Superoxide dismutase 1) (hSod1)
Protein function Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
PDB 1AZV , 1BA9 , 1DSW , 1FUN , 1HL4 , 1HL5 , 1KMG , 1L3N , 1MFM , 1N18 , 1N19 , 1OEZ , 1OZT , 1OZU , 1P1V , 1PTZ , 1PU0 , 1RK7 , 1SOS , 1SPD , 1UXL , 1UXM , 2AF2 , 2C9S , 2C9U , 2C9V , 2GBT , 2GBU , 2GBV , 2LU5 , 2MP3 , 2NAM , 2NNX , 2R27 , 2V0A , 2VR6 , 2VR7 , 2VR8 , 2WKO , 2WYT , 2WYZ , 2WZ0 , 2WZ5 , 2WZ6 , 2XJK , 2XJL , 2ZKW , 2ZKX , 2ZKY , 3CQP , 3CQQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00080 Sod_Cu 9 150 Copper/zinc superoxide dismutase (SODC) Domain
Sequence
Sequence length 154
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Peroxisome
Longevity regulating pathway - multiple species
Parkinson disease
Amyotrophic lateral sclerosis
Huntington disease
Prion disease
Pathways of neurodegeneration - multiple diseases
Chemical carcinogenesis - reactive oxygen species
  Platelet degranulation
Detoxification of Reactive Oxygen Species
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
326
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal central motor function Likely pathogenic rs121912445 RCV001813991
Amyotrophic lateral sclerosis Likely pathogenic; Pathogenic rs2123437030, rs121912443, rs76731700, rs1378590183 RCV001843934
RCV001843454
RCV001843542
RCV000857231
Amyotrophic lateral sclerosis 1, autosomal recessive Likely pathogenic rs121912445 RCV000015890
Amyotrophic lateral sclerosis type 1 Likely pathogenic; Pathogenic rs1568809169, rs1568810316, rs1027128618, rs1568810715, rs1568811366, rs121912438, rs1568811454, rs1280042397, rs1131690781, rs1555836169, rs121912453, rs1424014997, rs1568807400, rs1457889952, rs1312702973
View all (64 more)
RCV001318269
RCV001332469
RCV001374388
RCV001377993
RCV001378934
RCV001384618
RCV001882562
RCV002568339
RCV001866126
RCV001976221
RCV001958950
RCV001971733
RCV001942245
RCV002029618
RCV001978284
RCV002015993
RCV002016002
RCV002016007
RCV002249177
RCV002290075
RCV003517366
RCV003064620
RCV003041393
RCV003064621
RCV003064622
RCV003064624
RCV003064625
RCV003064626
RCV002624691
RCV000178103
RCV002605188
RCV002810765
RCV002862104
RCV002933812
RCV003517499
RCV003518824
RCV000015874
RCV000015875
RCV000015876
RCV000015877
RCV000015878
RCV000015879
RCV000015880
RCV000015881
RCV000015882
RCV000015883
RCV000015884
RCV000015885
RCV000015886
RCV000015887
RCV000015891
RCV000015892
RCV000015893
RCV000015894
RCV000015895
RCV000015896
RCV000015897
RCV000015898
RCV000015899
RCV000015900
RCV000015901
RCV000015903
RCV000015904
RCV000015905
RCV000015907
RCV000015909
RCV003628666
RCV003994640
RCV000529591
RCV000644456
RCV000664220
RCV000696225
RCV001386880
RCV001861989
RCV000808273
RCV000853537
RCV001858533
RCV001858765
RCV002290508
RCV000995880
RCV001065949
RCV001061075
RCV001064307
RCV001095541
RCV001095542
RCV001095543
RCV001095393
RCV001095394
RCV001095395
RCV001095397
RCV001095398
RCV001095400
RCV001095401
RCV002560266
RCV001203287
RCV001250175
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Adult onset neurodegenerative disorder Conflicting classifications of pathogenicity rs80265967 RCV005865183
Amyotrophic Lateral Sclerosis, Dominant Likely benign rs17878855 RCV000317743
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
AA amyloidosis Inhibit 14997933
AA amyloidosis Associate 16798882, 19325915, 24344300, 27496206, 28585802
Abortion Habitual Inhibit 26821085
Acromegaly Associate 29046499
Adenocarcinoma Associate 17409931
Adenocarcinoma of Lung Associate 16551617, 21930909, 31847905
Adenoma Associate 10363564
Adenomyosis Associate 10428161
AIDS Dementia Complex Associate 19101040
Alcoholic Neuropathy Associate 40219902