Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6615
Gene name Gene Name - the full gene name approved by the HGNC.
Snail family transcriptional repressor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SNAI1
Synonyms (NCBI Gene) Gene synonyms aliases
SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20q13.13
Summary Summary of gene provided in NCBI Entrez Gene.
The Drosophila embryonic protein snail is a zinc finger transcriptional repressor which downregulates the expression of ectodermal genes within the mesoderm. The nuclear protein encoded by this gene is structurally similar to the Drosophila snail protein,
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004651 hsa-miR-204-5p Luciferase reporter assay 20056717
MIRT006760 hsa-miR-30a-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
MIRT006760 hsa-miR-30a-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
MIRT006761 hsa-miR-30b-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
MIRT006761 hsa-miR-30b-5p Luciferase reporter assay, qRT-PCR, Western blot 21633953
Transcription factors
Transcription factor Regulation Reference
CREB1 Repression 15955695
ESRRA Repression 15955695
HMGA2 Unknown 22241470
HOXA10 Repression 16424022
ID2 Activation 22551584
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 11912130
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 15314165
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 11912130
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604238 11128 ENSG00000124216
Protein
UniProt ID O95863
Protein name Zinc finger protein SNAI1 (Protein snail homolog 1) (Protein sna)
Protein function Involved in induction of the epithelial to mesenchymal transition (EMT), formation and maintenance of embryonic mesoderm, growth arrest, survival and cell migration (PubMed:10655587, PubMed:15647282, PubMed:20389281, PubMed:20562920, PubMed:2195
PDB 2Y48 , 3W5K , 3ZMT , 4QLI , 8BOX , 8F59 , 8FDV , 8FJ7
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13912 zf-C2H2_6 153 177 Domain
PF00096 zf-C2H2 180 202 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 208 230 Zinc finger, C2H2 type Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in a variety of tissues with the highest expression in kidney. Expressed in mesenchymal and epithelial cell lines. {ECO:0000269|PubMed:10655587}.
Sequence
MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLI
WDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSS
LEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPC
VCGTCGKAFSRPWLLQGHVRTH
TGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQA
CARTFSRMSLLHKHQESGCSGCPR
Sequence length 264
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Adherens junction   Regulation of PTEN gene transcription
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyotrophic lateral sclerosis Amyotrophic Lateral Sclerosis, Familial rs267607084, rs312262720, rs312262752, rs121908287, rs121908288, rs29001584, rs28941475, rs121434378, rs386134173, rs386134174, rs80356730, rs80356727, rs4884357, rs80356717, rs80356733
View all (171 more)
11796754
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
24014025, 11850205
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
11850205, 24014025
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 21224055
Unknown
Disease term Disease name Evidence References Source
Psoriasis Psoriasis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Achalasia Addisonianism Alacrimia syndrome Associate 23011797
Adenocarcinoma Associate 18286686, 23923074, 25120788, 26037169
Adenocarcinoma Mucinous Associate 34103667
Adenocarcinoma of Lung Associate 23706092, 25120788, 27191258, 34118147, 34974792, 36071042, 37269912, 38069335, 38182570
Adenocarcinoma of Lung Inhibit 28077118
Adenoma Associate 23029563
Adenoma Pleomorphic Stimulate 31488082
Adenomyosis Associate 26307032
Adrenal Cortex Neoplasms Associate 19018264
Adrenocortical Carcinoma Associate 19018264