Gene Gene information from NCBI Gene database.
Entrez ID 6606
Gene name Survival of motor neuron 1, telomeric
Gene symbol SMN1
Synonyms (NCBI Gene)
BCD541GEMIN1SMASMA1SMA2SMA3SMA4SMA@SMNSMNTT-BCD541TDRD16A
Chromosome 5
Chromosome location 5q13.2
Summary This gene is part of a 500 kb inverted duplication on chromosome 5q13. This duplicated region contains at least four genes and repetitive elements which make it prone to rearrangements and deletions. The repetitiveness and complexity of the sequence have
miRNA miRNA information provided by mirtarbase database.
221
miRTarBase ID miRNA Experiments Reference
MIRT021810 hsa-miR-132-3p Microarray 17612493
MIRT028496 hsa-miR-30a-5p Proteomics 18668040
MIRT029454 hsa-miR-26b-5p Microarray 19088304
MIRT052963 hsa-miR-146a-5p AGS 22020746
MIRT053151 hsa-miR-21-5p Luciferase reporter assayWestern blot 23657402
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
JUN Repression 15550677
SRF Activation 15550677
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000245 Process Spliceosomal complex assembly IMP 9845364
GO:0000245 Process Spliceosomal complex assembly NAS 9323129
GO:0000375 Process RNA splicing, via transesterification reactions IEA
GO:0000387 Process Spliceosomal snRNP assembly EXP 12067652
GO:0000387 Process Spliceosomal snRNP assembly IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600354 11117 ENSG00000172062
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    snRNP Assembly
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
120
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Kugelberg-Welander disease Likely pathogenic; Pathogenic rs1554066659, rs1554066397, rs2112814388, rs104893931, rs77804083, rs104893927, rs104893932, rs2532126489, rs2532099835, rs2532112594, rs2532126303, rs2532126565, rs1554082110, rs397514517, rs397514518
View all (4 more)
RCV000009736
RCV000009740
RCV000009743
RCV000009745
RCV000009747
RCV000009753
RCV000009756
RCV003237288
RCV004576116
RCV004576117
RCV004576118
RCV004576180
RCV000496588
RCV000032708
RCV000032709
RCV005036113
RCV000009750
RCV000785811
RCV001089661
Spinal muscular atrophy Pathogenic; Likely pathogenic rs2112806512, rs2112806309, rs2532151486, rs77969175, rs104893922, rs1554066397, rs104893927, rs2532152556, rs1554082383, rs1561503058, rs141760116, rs1217001154, rs1290417835 RCV002273076
RCV002273293
RCV002640730
RCV002642356
RCV002470706
RCV005237366
RCV004786249
RCV003331771
RCV000586101
RCV000692613
RCV000780722
RCV000780721
RCV000780726
RCV001192812
Spinal muscular atrophy, type II Pathogenic; Likely pathogenic rs1554066397, rs77804083, rs104893930, rs104893935, rs2532113034, rs2532112958, rs1561499713, rs1199331007, rs1554082110, rs1217001154, rs1561498701, rs77668214 RCV000009739
RCV000009746
RCV000009752
RCV000009755
RCV004576119
RCV004576120
RCV004576181
RCV004576182
RCV000496588
RCV005036113
RCV000785795
RCV000009749
Spinal muscular atrophy, type IV Pathogenic; Likely pathogenic rs1554082110, rs1217001154, rs77668214 RCV000496588
RCV005036113
RCV000009751
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Uterine corpus endometrial carcinoma Likely benign rs200146682 RCV005898604
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Neoplasms Associate 33213169
Adrenal Insufficiency Associate 24317636
Alzheimer Disease Associate 36764297
Amyotrophic Lateral Sclerosis Associate 22274580, 22323753, 30786668, 33389754, 39506867
Amyotrophic lateral sclerosis 1 Associate 22187232
Angiomyolipoma Associate 36096809
Angiomyoma Stimulate 40578971
Aortic Dissection Inhibit 33910387
Arthrogryposis Associate 8787675
Atrophy Associate 14676483, 31560180, 37280513, 37542300