Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6606
Gene name Gene Name - the full gene name approved by the HGNC.
Survival of motor neuron 1, telomeric
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SMN1
Synonyms (NCBI Gene) Gene synonyms aliases
BCD541, GEMIN1, SMA, SMA1, SMA2, SMA3, SMA4, SMA@, SMN, SMNT, T-BCD541, TDRD16A
Disease Acronyms (UniProt) Disease acronyms from UniProt database
SMA1, SMA2, SMA3, SMA4
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is part of a 500 kb inverted duplication on chromosome 5q13. This duplicated region contains at least four genes and repetitive elements which make it prone to rearrangements and deletions. The repetitiveness and complexity of the sequence have
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT021810 hsa-miR-132-3p Microarray 17612493
MIRT028496 hsa-miR-30a-5p Proteomics 18668040
MIRT029454 hsa-miR-26b-5p Microarray 19088304
MIRT052963 hsa-miR-146a-5p AGS 22020746
MIRT053151 hsa-miR-21-5p Luciferase reporter assay, Western blot 23657402
Transcription factors
Transcription factor Regulation Reference
JUN Repression 15550677
SRF Activation 15550677
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000245 Process Spliceosomal complex assembly IMP 9845364
GO:0000245 Process Spliceosomal complex assembly NAS 9323129
GO:0000387 Process Spliceosomal snRNP assembly IBA 21873635
GO:0000387 Process Spliceosomal snRNP assembly IDA 18984161
GO:0000387 Process Spliceosomal snRNP assembly TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600354 11117 ENSG00000172062
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    snRNP Assembly
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Arthrogryposis multiplex congenita Arthrogryposis rs1586285494, rs80358233, rs137853305, rs1559154278, rs398124167, rs398124172, rs587780399, rs786204576, rs786204430, rs769345284, rs749355583, rs793888524, rs793888525, rs878854368, rs555445835
View all (138 more)
8787675
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Distal hereditary motor neuronopathy Hereditary Motor Neuronopathy rs104894345, rs104894351, rs137852970, rs137852972, rs267607143, rs267607145, rs28939680, rs29001571, rs28937568, rs28937569, rs104894020, rs121909112, rs121909113, rs121909342, rs786205090
View all (57 more)
19150990, 21819082, 15862279, 27111068, 21350916
Distal spinal muscular atrophy Distal Spinal Muscular Atrophy rs29001584, rs28941475, rs121434378, rs267607146, rs137852665, rs137852666, rs137852667, rs137852668, rs786205089, rs137852669, rs786205090, rs137852670, rs137852646, rs372000714, rs724159994
View all (44 more)
21819082, 15862279, 19150990, 21350916, 27111068
Unknown
Disease term Disease name Evidence References Source
Spinal Muscular Atrophy spinal muscular atrophy, type 1, spinal muscular atrophy, type II, spinal muscular atrophy, type III GenCC
Associations from Text Mining
Disease Name Relationship Type References
Abdominal Neoplasms Associate 33213169
Adrenal Insufficiency Associate 24317636
Alzheimer Disease Associate 36764297
Amyotrophic Lateral Sclerosis Associate 22274580, 22323753, 30786668, 33389754, 39506867
Amyotrophic lateral sclerosis 1 Associate 22187232
Angiomyolipoma Associate 36096809
Angiomyoma Stimulate 40578971
Aortic Dissection Inhibit 33910387
Arthrogryposis Associate 8787675
Atrophy Associate 14676483, 31560180, 37280513, 37542300