Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	65980
Gene name Gene Name - the full gene name approved by the HGNC.	Bromodomain containing 9
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	BRD9
Synonyms (NCBI Gene) Gene synonyms aliases	LAVS3040, PRO9856, SMARCI2
Chromosome Chromosome number	5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	5p15.33

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miRTarBase ID	miRNA	Experiments	Reference
MIRT728197	hsa-miR-19a-3p	HITS-CLIP	22473208
MIRT728196	hsa-miR-19b-3p	HITS-CLIP	22473208
MIRT824540	hsa-miR-1231	CLIP-seq
MIRT824541	hsa-miR-150	CLIP-seq
MIRT824542	hsa-miR-1914	CLIP-seq
MIRT824543	hsa-miR-2115	CLIP-seq
MIRT824544	hsa-miR-329	CLIP-seq
MIRT824545	hsa-miR-335	CLIP-seq
MIRT824546	hsa-miR-3618	CLIP-seq
MIRT824547	hsa-miR-362-3p	CLIP-seq
MIRT824548	hsa-miR-3973	CLIP-seq
MIRT824549	hsa-miR-4288	CLIP-seq
MIRT824550	hsa-miR-4436a	CLIP-seq
MIRT824551	hsa-miR-4502	CLIP-seq
MIRT824552	hsa-miR-4670-5p	CLIP-seq
MIRT824553	hsa-miR-516a-3p	CLIP-seq
MIRT824554	hsa-miR-520g	CLIP-seq
MIRT824555	hsa-miR-520h	CLIP-seq
MIRT824556	hsa-miR-548ae	CLIP-seq
MIRT824557	hsa-miR-548aj	CLIP-seq
MIRT824558	hsa-miR-548am	CLIP-seq
MIRT824559	hsa-miR-548x	CLIP-seq
MIRT824560	hsa-miR-550a	CLIP-seq
MIRT824561	hsa-miR-632	CLIP-seq
MIRT824562	hsa-miR-934	CLIP-seq
MIRT824563	hsa-miR-140-3p	CLIP-seq
MIRT824564	hsa-miR-1915	CLIP-seq
MIRT824565	hsa-miR-3155	CLIP-seq
MIRT824566	hsa-miR-3155b	CLIP-seq
MIRT824567	hsa-miR-4275	CLIP-seq
MIRT824568	hsa-miR-4726-3p	CLIP-seq
MIRT824569	hsa-miR-483-3p	CLIP-seq
MIRT824570	hsa-miR-484	CLIP-seq
MIRT824571	hsa-miR-628-5p	CLIP-seq
MIRT1943726	hsa-miR-1324	CLIP-seq
MIRT1943727	hsa-miR-3151	CLIP-seq
MIRT1943728	hsa-miR-3166	CLIP-seq
MIRT1943729	hsa-miR-4257	CLIP-seq
MIRT824550	hsa-miR-4436a	CLIP-seq
MIRT1943730	hsa-miR-4462	CLIP-seq
MIRT1943731	hsa-miR-486-3p	CLIP-seq
MIRT824546	hsa-miR-3618	CLIP-seq
MIRT2182459	hsa-miR-425	CLIP-seq
MIRT824569	hsa-miR-483-3p	CLIP-seq
MIRT2182460	hsa-miR-603	CLIP-seq
MIRT2182461	hsa-miR-873	CLIP-seq
MIRT824562	hsa-miR-934	CLIP-seq
MIRT2486123	hsa-miR-1266	CLIP-seq
MIRT2486124	hsa-miR-1270	CLIP-seq
MIRT1943726	hsa-miR-1324	CLIP-seq
MIRT824563	hsa-miR-140-3p	CLIP-seq
MIRT824541	hsa-miR-150	CLIP-seq
MIRT824542	hsa-miR-1914	CLIP-seq
MIRT1943727	hsa-miR-3151	CLIP-seq
MIRT1943728	hsa-miR-3166	CLIP-seq
MIRT2486125	hsa-miR-3187-3p	CLIP-seq
MIRT824544	hsa-miR-329	CLIP-seq
MIRT824545	hsa-miR-335	CLIP-seq
MIRT824546	hsa-miR-3618	CLIP-seq
MIRT824547	hsa-miR-362-3p	CLIP-seq
MIRT2486126	hsa-miR-3677-3p	CLIP-seq
MIRT1943729	hsa-miR-4257	CLIP-seq
MIRT2486127	hsa-miR-4283	CLIP-seq
MIRT2486128	hsa-miR-432	CLIP-seq
MIRT824550	hsa-miR-4436a	CLIP-seq
MIRT1943730	hsa-miR-4462	CLIP-seq
MIRT2486129	hsa-miR-4489	CLIP-seq
MIRT2486130	hsa-miR-4518	CLIP-seq
MIRT2486131	hsa-miR-4522	CLIP-seq
MIRT2486132	hsa-miR-4529-5p	CLIP-seq
MIRT2486133	hsa-miR-4531	CLIP-seq
MIRT824552	hsa-miR-4670-5p	CLIP-seq
MIRT2486134	hsa-miR-4760-3p	CLIP-seq
MIRT2486135	hsa-miR-4777-3p	CLIP-seq
MIRT824569	hsa-miR-483-3p	CLIP-seq
MIRT1943731	hsa-miR-486-3p	CLIP-seq
MIRT824560	hsa-miR-550a	CLIP-seq
MIRT2486136	hsa-miR-620	CLIP-seq
MIRT2486137	hsa-miR-664	CLIP-seq
MIRT824562	hsa-miR-934	CLIP-seq
MIRT1943726	hsa-miR-1324	CLIP-seq
MIRT824541	hsa-miR-150	CLIP-seq
MIRT824542	hsa-miR-1914	CLIP-seq
MIRT1943727	hsa-miR-3151	CLIP-seq
MIRT1943728	hsa-miR-3166	CLIP-seq
MIRT824544	hsa-miR-329	CLIP-seq
MIRT824545	hsa-miR-335	CLIP-seq
MIRT824546	hsa-miR-3618	CLIP-seq
MIRT824547	hsa-miR-362-3p	CLIP-seq
MIRT1943729	hsa-miR-4257	CLIP-seq
MIRT824550	hsa-miR-4436a	CLIP-seq
MIRT824552	hsa-miR-4670-5p	CLIP-seq
MIRT1943731	hsa-miR-486-3p	CLIP-seq
MIRT824560	hsa-miR-550a	CLIP-seq
MIRT824562	hsa-miR-934	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0000785	Component	Chromatin	NAS	29374058
GO:0003676	Function	Nucleic acid binding	NAS	18559093
GO:0005515	Function	Protein binding	IPI	25416956, 32296183
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	25593309
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0006325	Process	Chromatin organization	IEA
GO:0006338	Process	Chromatin remodeling	NAS	29374058
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	NAS	29374058
GO:0008284	Process	Positive regulation of cell population proliferation	NAS	29374058
GO:0016514	Component	SWI/SNF complex	IDA	23644491, 29374058
GO:0045596	Process	Negative regulation of cell differentiation	NAS	30510198
GO:0140288	Component	GBAF complex	NAS	29374058
GO:0140566	Function	Histone reader activity	IBA
GO:0140566	Function	Histone reader activity	IDA	22464331
GO:1902459	Process	Positive regulation of stem cell population maintenance	NAS	30510198

MIM	HGNC	e!Ensembl
618465	25818	ENSG00000028310

Protein

UniProt ID

Q9H8M2

Protein name

Bromodomain-containing protein 9 (Rhabdomyosarcoma antigen MU-RMS-40.8)

Protein function

Plays a role in chromatin remodeling and regulation of transcription (PubMed:22464331, PubMed:26365797). Acts as a chromatin reader that recognizes and binds acylated histones: binds histones that are acetylated and/or butyrylated (PubMed:263657

PDB

3HME , 4NQN , 4UIT , 4UIU , 4UIV , 4UIW , 4XY8 , 4YY4 , 4YY6 , 4YYD , 4YYG , 4YYH , 4YYI , 4YYJ , 4YYK , 4Z6H , 4Z6I , 5E9V , 5EU1 , 5F1H , 5F1L , 5F25 , 5F2P , 5I40 , 5I7X , 5I7Y , 5IGM , 5IGN , 5JI8 , 5MKY , 5TWX , 6BQA , 6HM0 , 6UZF , 6V0S , 6V0X , 6V14 , 6V1B , 6Y7H , 6Y7I , 6Y7J , 6Y7K , 6Y7L , 6YQR , 6YQS , 6YQW , 8A7I , 8AHC

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00439	Bromodomain	142 → 228	Bromodomain	Domain
PF12024	DUF3512	286 → 465	Domain of unknown function (DUF3512)	Family

Sequence

MGKKHKKHKAEWRSSYEDYADKPLEKPLKLVLKVGGSEVTELSGSGHDSSYYDDRSDHER
ERHKEKKKKKKKKSEKEKHLDDEERRKRKEEKKRKREREHCDTEGEADDFDPGKKVEVEP
PPDRPVRACRTQPAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHP
MDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKQ
AALLGNEDTAVEEPVPEVVPVQVETAKKSKKPSREVISCMFEPEGNACSLTDSTAEEHVL
ALVEHAADEARDRINRFLPGGKMGYLKRNGDGSLLYSVVNTAEPDADEEETHPVDLSSLS
SKLLPGFTTLGFKDERRNKVTFLSSATTALSMQNNSVFGDLKSDEMELLYSAYGDETGVQ
CALSLQEFVKDAGSYSKKVVDDLLDQITGGDHSRTLFQLKQRRNVPMKPPDEAKVGDTLG
DSSSSVLEFMSMKSYPDVSVDISMLSSLGKVKKELDPDDSHLNLDETTKLLQDLHEAQAE
RGGSRPSSNLSSLSNASERDQHHLGSPSRLSVGEQPDVTHDPYEFLQSPEPAASAKT

Sequence length

597

Interactions

View interactions

	KEGG
	ATP-dependent chromatin remodeling

BRD9 (bromodomain containing 9)