Gene Gene information from NCBI Gene database.
Entrez ID 6598
Gene name SWI/SNF related BAF chromatin remodeling complex subunit B1
Gene symbol SMARCB1
Synonyms (NCBI Gene)
BAF47CSS3INI-1INI1MRD15PPP1R144RDTRTPS1SNF5SNF5L1SWNTS1Sfh1pSnr1hSNFS
Chromosome 22
Chromosome location 22q11.23|22q11
Summary The protein encoded by this gene is part of a complex that relieves repressive chromatin structures, allowing the transcriptional machinery to access its targets more effectively. The encoded nuclear protein may also bind to and enhance the DNA joining ac
SNPs SNP information provided by dbSNP.
32
SNP ID Visualize variation Clinical significance Consequence
rs74315513 C>T Pathogenic Stop gained, coding sequence variant
rs112038099 G>A,C Pathogenic Splice donor variant
rs121434496 C>T Pathogenic Coding sequence variant, stop gained
rs138184483 C>G,T Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs149451748 C>T Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
44
miRTarBase ID miRNA Experiments Reference
MIRT004861 hsa-miR-192-5p Luciferase reporter assayqRT-PCR 19074876
MIRT023864 hsa-miR-1-3p Proteomics 18668040
MIRT024448 hsa-miR-215-5p Microarray 19074876
MIRT004861 hsa-miR-192-5p Reporter assay;Microarray;Other 19074876
MIRT051937 hsa-let-7b-5p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
PARP1 Unknown 17616514
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
75
GO ID Ontology Definition Evidence Reference
GO:0000228 Component Nuclear chromosome IEA
GO:0000776 Component Kinetochore NAS 11078522
GO:0000785 Component Chromatin HDA 16217013
GO:0000785 Component Chromatin NAS 12192000
GO:0001164 Function RNA polymerase I core promoter sequence-specific DNA binding IMP 22368283
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601607 11103 ENSG00000099956
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q12824
Protein name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (BRG1-associated factor 47) (BAF47) (Integrase interactor 1 protein) (SNF5 homolog) (hSNF5)
Protein function Core component of the BAF (hSWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. The BAF complex is
PDB 5AJ1 , 5GJK , 5L7A , 5L7B , 6AX5 , 6KAG , 6KZ7 , 6LTH , 6LTJ , 6LZP , 6UCH , 7VDV , 7Y8R
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04855 SNF5 179 256 SNF5 / SMARCB1 / INI1 Family
PF04855 SNF5 249 373 SNF5 / SMARCB1 / INI1 Family
Sequence
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESY
PTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTR
RMRRLANTAPAW
Sequence length 385
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  ATP-dependent chromatin remodeling
Viral life cycle - HIV-1
Thermogenesis
Hepatocellular carcinoma
  RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
768
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Atypical teratoid rhabdoid tumor Pathogenic rs2146045204, rs1060503015, rs1555877286 RCV006254315
RCV006254061
RCV006254124
Coffin-Siris syndrome Likely pathogenic; Pathogenic rs2146026614, rs878854600, rs1057517825, rs398122368, rs2030331202 RCV001806729
RCV005365185
RCV004798828
RCV004556052
RCV001269267
Colon adenocarcinoma Likely pathogenic; Pathogenic rs1057517825 RCV005900669
Embryonal rhabdomyosarcoma Likely pathogenic; Pathogenic rs1057517825 RCV006253943
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Adenoid cystic carcinoma - rs398122368 RCV004813296
Autism spectrum disorder Likely benign; Conflicting classifications of pathogenicity rs1568943183, rs1601405064 RCV003127452
RCV003127587
Cervical cancer Likely benign rs143872602 RCV005916445
Developmental disorder Conflicting classifications of pathogenicity; Uncertain significance rs2517660810, rs398122368 RCV003127295
RCV003764453
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
22q11 Deletion Syndrome Associate 21613800
Acute Retroviral Syndrome Associate 15589835
Adenocarcinoma Associate 23161234, 25007146, 31468350, 31906887, 35307773, 38085333, 40101550
Adenoma Associate 23425390
Alcoholism Associate 28981154
Anemia Associate 29907796
Anemia Sickle Cell Inhibit 30980040
Antisocial Personality Disorder Associate 28981154
Astrocytoma Associate 28181325
Brain Neoplasms Associate 26109171