Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6597
Gene name Gene Name - the full gene name approved by the HGNC.
SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SMARCA4
Synonyms (NCBI Gene) Gene synonyms aliases
BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12, RTPS2, SNF2, SNF2-beta, SNF2L4, SNF2LB, SWI2, hSNF2b
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19p13.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the SWI/SNF family of proteins and is similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by alt
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs115992445 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, non coding transcript variant, synonymous variant
rs117611401 C>A,G,T Benign-likely-benign, likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance Intron variant
rs141259126 C>A,G,T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Non coding transcript variant, synonymous variant, coding sequence variant
rs141806282 T>G Likely-benign, benign, conflicting-interpretations-of-pathogenicity Non coding transcript variant, synonymous variant, coding sequence variant
rs145867502 G>A Likely-benign, conflicting-interpretations-of-pathogenicity, not-provided Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006516 hsa-miR-21-5p Luciferase reporter assay, qRT-PCR, Western blot 21317927
MIRT006516 hsa-miR-21-5p Luciferase reporter assay, qRT-PCR, Western blot 21317927
MIRT006516 hsa-miR-21-5p Luciferase reporter assay, qRT-PCR, Western blot 21317927
MIRT006516 hsa-miR-21-5p Luciferase reporter assay, qRT-PCR, Western blot 21317927
MIRT020993 hsa-miR-155-5p Reporter assay;Other 20584899
Transcription factors
Transcription factor Regulation Reference
STAT1 Unknown 16195385
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II TAS 17938176, 19149898
GO:0000776 Component Kinetochore NAS 11078522
GO:0000785 Component Chromatin HDA 16217013
GO:0000785 Component Chromatin IBA
GO:0000785 Component Chromatin IDA 12065415, 15774904
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603254 11100 ENSG00000127616
Protein
UniProt ID P51532
Protein name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 (SMARCA4) (EC 3.6.4.-) (BRG1-associated factor 190A) (BAF190A) (Mitotic growth and transcription activator) (Protein BRG-1) (Protein brahma homolog 1) (SNF2-beta
Protein function ATPase involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing c
PDB 2GRC , 2H60 , 3UVD , 5DKD , 5EA1 , 6BGH , 6HR2 , 6LTH , 6LTJ , 6SY2 , 6ZS2 , 7TAB , 7TD9 , 7VDT , 7VDV , 7VRB , 7Y8R , 8EB1 , 8G1Q , 8QJR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08880 QLQ 171 205 QLQ Domain
PF07529 HSA 461 531 HSA Domain
PF07533 BRK 611 654 BRK domain Domain
PF00176 SNF2_N 728 1052 SNF2 family N-terminal domain Family
PF00271 Helicase_C 1080 1194 Helicase conserved C-terminal domain Family
PF14619 SnAC 1322 1389 Snf2-ATP coupling, chromatin remodelling complex Domain
PF00439 Bromodomain 1462 1551 Bromodomain Domain
Tissue specificity TISSUE SPECIFICITY: Colocalizes with ZEB1 in E-cadherin-negative cells from established lines, and stroma of normal colon as well as in de-differentiated epithelial cells at the invasion front of colorectal carcinomas (at protein level). {ECO:0000269|PubM
Sequence
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQ
GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLM
AEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMF
QHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG
QQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWL
KAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI
VLQSVFTSV
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
RAKPVVSDDDSEEEQEEDRSGSGSEED
Sequence length 1647
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  ATP-dependent chromatin remodeling
Thermogenesis
Hepatocellular carcinoma
  Interleukin-7 signaling
Formation of the beta-catenin:TCF transactivating complex
RMTs methylate histone arginines
Chromatin modifying enzymes
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
EGR2 and SOX10-mediated initiation of Schwann cell myelination
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Developmental Delay global developmental delay rs2087029320 N/A
Mental retardation Intellectual disability, autosomal dominant 16 rs770014321, rs1600082188, rs876657378, rs281875227, rs770680174, rs281875228, rs797045984, rs281875229, rs281875230, rs587779750, rs1060499936 N/A
neoplasm Neoplasm rs1568498107 N/A
Rhabdoid Tumor Predisposition Syndrome rhabdoid tumor predisposition syndrome 2 rs1568419675, rs587777461, rs1060502085, rs1064796254, rs1555773269, rs2086888561, rs1568462513, rs587777462, rs1060502102, rs1600644640, rs1555774786, rs2087033635, rs1568455217, rs587777463, rs1064794284
View all (40 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Alzheimer disease Alzheimer's disease or family history of Alzheimer's disease N/A N/A GWAS
Breast Cancer Malignant tumor of breast N/A N/A ClinVar
Coffin-Siris Syndrome coffin-siris syndrome, Coffin-Siris syndrome 1, Coffin-Siris syndrome N/A N/A ClinVar, GenCC
Colorectal Cancer hereditary nonpolyposis colon cancer N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Achalasia Addisonianism Alacrimia syndrome Associate 27029062, 27223259
Adenocarcinoma Inhibit 16998464
Adenocarcinoma Associate 29522538, 30885352, 31208361, 31906887, 31988001, 33506581, 34432771, 35468657, 37054973, 40101550
Adenocarcinoma Clear Cell Associate 37697729
Adenocarcinoma Mucinous Associate 35900231
Adenocarcinoma of Lung Associate 22975805, 30089603, 31987030, 32083571, 32460018, 32855269, 33107184, 33355651, 34240140, 34675941, 35964518, 40453096
Adenocarcinoma of Lung Inhibit 23163725
Adenoma Pleomorphic Associate 36178285
AIDS Dementia Complex Associate 34205270
Alzheimer Disease Associate 37895183