Gene Gene information from NCBI Gene database.
Entrez ID 6576
Gene name Solute carrier family 25 member 1
Gene symbol SLC25A1
Synonyms (NCBI Gene)
CICCMS23CTPD2L2ADSEASLC20A3
Chromosome 22
Chromosome location 22q11.21
Summary This gene encodes a member of the mitochondrial carrier subfamily of solute carrier proteins. Members of this family include nuclear-encoded transporters that translocate small metabolites across the mitochondrial membrane. This protein regulates the move
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs368647424 C>T Pathogenic Coding sequence variant, intron variant, missense variant
rs431905509 G>A,C Pathogenic, likely-pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs431905510 C>G,T Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs483352910 G>A Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs483352911 TTGTTCCCGC>- Pathogenic, likely-pathogenic Non coding transcript variant, frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
296
miRTarBase ID miRNA Experiments Reference
MIRT001333 hsa-miR-1-3p pSILAC 18668040
MIRT018228 hsa-miR-335-5p Microarray 18185580
MIRT001333 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT001333 hsa-miR-1-3p Proteomics 18668040
MIRT001593 hsa-let-7b-5p Proteomics 18668040
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0005634 Component Nucleus HDA 21630459
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IBA
GO:0005739 Component Mitochondrion IEA
GO:0005743 Component Mitochondrial inner membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
190315 10979 ENSG00000100075
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P53007
Protein name Tricarboxylate transport protein, mitochondrial (Citrate transport protein) (CTP) (Mitochondrial citrate carrier) (CIC) (Solute carrier family 25 member 1) (Tricarboxylate carrier protein)
Protein function Mitochondrial electroneutral antiporter that exports citrate from the mitochondria into the cytosol in exchange for malate (PubMed:26870663, PubMed:29031613, PubMed:29238895, PubMed:39881208). Also able to mediate the exchange of citrate for iso
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00153 Mito_carr 21 116 Mitochondrial carrier protein Family
PF00153 Mito_carr 117 213 Mitochondrial carrier protein Family
PF00153 Mito_carr 216 308 Mitochondrial carrier protein Family
Sequence
Sequence length 311
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Gluconeogenesis
Fatty acyl-CoA biosynthesis
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
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Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
2-hydroxyglutaric aciduria Likely pathogenic; Pathogenic rs781925968, rs431905509, rs483352911, rs781974501 RCV001706807
RCV000035018
RCV000035022
RCV000850394
D,L-2-hydroxyglutaric aciduria Likely pathogenic; Pathogenic rs431905509, rs431905510, rs483352910, rs483352911 RCV001801241
RCV001801242
RCV001801243
RCV001801245
RCV001801246
Melanoma Likely pathogenic rs483352910 RCV005888967
Myasthenic syndrome, congenital, 23, presynaptic Likely pathogenic; Pathogenic rs2517258643, rs2517258834, rs781908532, rs781974501 RCV003988787
RCV003990343
RCV000722131
RCV004813144
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Likely benign rs201261311 RCV005899901
Familial cancer of breast Likely benign rs201261311 RCV005899900
Ovarian serous cystadenocarcinoma Likely benign rs376575655, rs201261311 RCV005921058
RCV005899902
Thyroid cancer, nonmedullary, 1 Likely benign rs375963287 RCV005901563
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
2 Hydroxyglutaricaciduria Associate 23561848, 29238895, 31527857, 32660532
Behcet Syndrome Stimulate 30050389
Brain Diseases Associate 29031613, 32919421
Carcinoma Hepatocellular Associate 29546056
Death Associate 29031613
Developmental Disabilities Associate 29031613
DiGeorge Syndrome Associate 26221035, 36869225, 9326327
Disease Associate 31527857, 32660532
Drug Related Side Effects and Adverse Reactions Associate 29546056
Genetic Diseases Inborn Associate 29031613