Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6576
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier family 25 member 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLC25A1
Synonyms (NCBI Gene) Gene synonyms aliases
CIC, CMS23, CTP, D2L2AD, SEA, SLC20A3
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CMS23, D2L2AD
Chromosome Chromosome number
22
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
22q11.21
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the mitochondrial carrier subfamily of solute carrier proteins. Members of this family include nuclear-encoded transporters that translocate small metabolites across the mitochondrial membrane. This protein regulates the move
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs368647424 C>T Pathogenic Coding sequence variant, intron variant, missense variant
rs431905509 G>A,C Pathogenic, likely-pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs431905510 C>G,T Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs483352910 G>A Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs483352911 TTGTTCCCGC>- Pathogenic, likely-pathogenic Non coding transcript variant, frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001333 hsa-miR-1-3p pSILAC 18668040
MIRT018228 hsa-miR-335-5p Microarray 18185580
MIRT001333 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT001333 hsa-miR-1-3p Proteomics 18668040
MIRT001593 hsa-let-7b-5p Proteomics 18668040
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005634 Component Nucleus HDA 21630459
GO:0005743 Component Mitochondrial inner membrane TAS
GO:0006094 Process Gluconeogenesis TAS
GO:0006843 Process Mitochondrial citrate transmembrane transport IBA 21873635
GO:0015137 Function Citrate transmembrane transporter activity TAS 8666394
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
190315 10979 ENSG00000100075
Protein
UniProt ID P53007
Protein name Tricarboxylate transport protein, mitochondrial (Citrate transport protein) (CTP) (Mitochondrial citrate carrier) (CIC) (Solute carrier family 25 member 1) (Tricarboxylate carrier protein)
Protein function Mitochondrial electroneutral antiporter that exports citrate from the mitochondria into the cytosol in exchange for malate (PubMed:26870663, PubMed:29031613, PubMed:29238895, PubMed:39881208). Also able to mediate the exchange of citrate for iso
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00153 Mito_carr 21 116 Mitochondrial carrier protein Family
PF00153 Mito_carr 117 213 Mitochondrial carrier protein Family
PF00153 Mito_carr 216 308 Mitochondrial carrier protein Family
Sequence
Sequence length 311
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Gluconeogenesis
Fatty acyl-CoA biosynthesis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Agenesis of corpus callosum Agenesis of corpus callosum rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057, rs1384496494, rs1599017933
Arthrogryposis multiplex congenita Arthrogryposis rs1586285494, rs80358233, rs137853305, rs1559154278, rs398124167, rs398124172, rs587780399, rs786204576, rs786204430, rs769345284, rs749355583, rs793888524, rs793888525, rs878854368, rs555445835
View all (138 more)
Myasthenic syndrome Congenital Myasthenic Syndromes, Presynaptic, Presynaptic congenital myasthenic syndromes, MYASTHENIC SYNDROME, CONGENITAL, 23, PRESYNAPTIC rs606231128, rs606231129, rs606231130, rs606231131, rs606231132, rs118203994, rs118203995, rs863223277, rs606231133, rs121908547, rs121908553, rs121908557, rs104893733, rs104893734, rs121908922
View all (237 more)
26870663, 29031613
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Distal amyotrophy Distal amyotrophy ClinVar
Ptosis Blepharoptosis, Ptosis ClinVar
Myasthenic Syndrome presynaptic congenital myasthenic syndrome GenCC
Mitochondrial Diseases mitochondrial disease GenCC
Associations from Text Mining
Disease Name Relationship Type References
2 Hydroxyglutaricaciduria Associate 23561848, 29238895, 31527857, 32660532
Behcet Syndrome Stimulate 30050389
Brain Diseases Associate 29031613, 32919421
Carcinoma Hepatocellular Associate 29546056
Death Associate 29031613
Developmental Disabilities Associate 29031613
DiGeorge Syndrome Associate 26221035, 36869225, 9326327
Disease Associate 31527857, 32660532
Drug Related Side Effects and Adverse Reactions Associate 29546056
Genetic Diseases Inborn Associate 29031613