Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6558
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier family 12 member 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLC12A2
Synonyms (NCBI Gene) Gene synonyms aliases
BSC, BSC-2, BSC2, CCC1, KILQS, NKCC1, PPP1R141, hNKCC1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
KILQS
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q23.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene mediates sodium and chloride transport and reabsorption. The encoded protein is a membrane protein and is important in maintaining proper ionic balance and cell volume. This protein is phosphorylated in response to DNA dam
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs886040968 GTCTGGTGGCT>- Likely-pathogenic Coding sequence variant, non coding transcript variant, frameshift variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001417 hsa-miR-16-5p pSILAC 18668040
MIRT028509 hsa-miR-30a-5p Proteomics 18668040
MIRT001417 hsa-miR-16-5p Proteomics;Other 18668040
MIRT051865 hsa-let-7c-5p CLASH 23622248
MIRT545472 hsa-miR-8485 HITS-CLIP 21572407
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 17721439, 22570591, 24555568
GO:0005829 Component Cytosol IEA
GO:0005886 Component Plasma membrane IDA 7629105
GO:0005886 Component Plasma membrane TAS
GO:0005887 Component Integral component of plasma membrane TAS 7629105
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600840 10911 ENSG00000064651
Protein
UniProt ID P55011
Protein name Solute carrier family 12 member 2 (Basolateral Na-K-Cl symporter) (Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2) (BSC2) (Na-K-2Cl cotransporter 1) (hNKCC1)
Protein function Cation-chloride cotransporter which mediates the electroneutral transport of chloride, potassium and/or sodium ions across the membrane (PubMed:16669787, PubMed:32081947, PubMed:32294086, PubMed:33597714, PubMed:35585053, PubMed:36239040, PubMed
PDB 6PZT , 7D10 , 7MXO , 7N3N , 7S1X , 7S1Y , 7S1Z , 7SFL , 7SMP , 7ZGO , 8STE , 9C0E , 9C0G , 9C0H
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08403 AA_permease_N 202 267 Amino acid permease N-terminal Family
PF00324 AA_permease 290 793 Amino acid permease Family
PF03522 SLC12 801 1212 Solute carrier family 12 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in many tissues. {ECO:0000269|PubMed:7629105}.
Sequence
MEPRPTAPSSGAPGLAGVGETPSAAALAAARVELPGTAVPSVPEDAAPASRDGGGVRDEG
PAAAGDGLGRPLGPTPSQSRFQVDLVSENAGRAAAAAAAAAAAAAAAGAGAGAKQTPADG
EASGESEPAKGSEEAKGRFRVNFVDPAASSSAEDSLSDAAGVGVDGPNVSFQNGGDTVLS
EGSSLHSGGGGGSGHHQHYYYDTHTNTYYLRTFGHNTMDAVPRIDHYRHTAAQLGEKLLR
PSLAELHDELEKEPFEDGFANGEESTP
TRDAVVTYTAESKGVVKFGWIKGVLVRCMLNIW
GVMLFIRLSWIVGQAGIGLSVLVIMMATVVTTITGLSTSAIATNGFVRGGGAYYLISRSL
GPEFGGAIGLIFAFANAVAVAMYVVGFAETVVELLKEHSILMIDEINDIRIIGAITVVIL
LGISVAGMEWEAKAQIVLLVILLLAIGDFVIGTFIPLESKKPKGFFGYKSEIFNENFGPD
FREEETFFSVFAIFFPAATGILAGANISGDLADPQSAIPKGTLLAILITTLVYVGIAVSV
GSCVVRDATGNVNDTIVTELTNCTSAACKLNFDFSSCESSPCSYGLMNNFQVMSMVSGFT
PLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAKGYGKNNEPLRGYILTFL
IALGFILIAELNVIAPIISNFFLASYALINFSVFHASLAKSPGWRPAFKYYNMWISLLGA
ILCCIVMFVINWWAALLTYVIVLGLYIYVTYKKPDVNWGSSTQALTYLNALQHSIRLSGV
EDHVKNFRPQCLV
MTGAPNSRPALLHLVHDFTKNVGLMICGHVHMGPRRQAMKEMSIDQA
KYQRWLIKNKMKAFYAPVHADDLREGAQYLMQAAGLGRMKPNTLVLGFKKDWLQADMRDV
DMYINLFHDAFDIQYGVVVIRLKEGLDISHLQGQEELLSSQEKSPGTKDVVVSVEYSKKS
DLDTSKPLSEKPITHKVEEEDGKTATQPLLKKESKGPIVPLNVADQKLLEASTQFQKKQG
KNTIDVWWLFDDGGLTLLIPYLLTTKKKWKDCKIRVFIGGKINRIDHDRRAMATLLSKFR
IDFSDIMVLGDINTKPKKENIIAFEEIIEPYRLHEDDKEQDIADKMKEDEPWRITDNELE
LYKTKTYRQIRLNELLKEHSSTANIIVMSLPVARKGAVSSALYMAWLEALSKDLPPILLV
RGNHQSVLTFYS
Sequence length 1212
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Salivary secretion
Pancreatic secretion
Vibrio cholerae infection
  Cation-coupled Chloride cotransporters
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Carcinoma Carcinoma, Carcinoma, Spindle-Cell, Undifferentiated carcinoma rs121912654, rs555607708, rs786202962, rs1564055259 12376462
Cardiomyopathy Cardiomyopathy, Dilated rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
Epilepsy Epilepsy, Epilepsy, Temporal Lobe, Uncinate Epilepsy, Epilepsy, Cryptogenic, Epilepsy, Benign Psychomotor, Childhood, Epilepsy, Lateral Temporal, Awakening Epilepsy rs113994140, rs28937874, rs1589762127, rs104894166, rs28939075, rs2134001459, rs104894167, rs119488099, rs119488100, rs387906420, rs121917752, rs121918622, rs281865564, rs387907313, rs397514670
View all (165 more)
18550034, 19674083
Hypertension Hypertensive disease rs13306026 17259435
Unknown
Disease term Disease name Evidence References Source
Mental retardation syndromic intellectual disability GenCC
Deafness hearing loss, autosomal dominant 78 GenCC
Non-Syndromic Intellectual Disability autosomal recessive non-syndromic intellectual disability GenCC
Pelvic Organ Prolapse Pelvic Organ Prolapse GWAS
Associations from Text Mining
Disease Name Relationship Type References
Asthma Associate 11544191
Bilateral Vestibulopathy Associate 32658972
Brain Neoplasms Associate 24555568, 28679472
Carcinoma Non Small Cell Lung Associate 33682977
Cerebral Intraventricular Hemorrhage Stimulate 36893755
Congenital Abnormalities Associate 32658972
Constipation Associate 35968893
Cortical Dysplasia Focal Epilepsy Syndrome Associate 22447678
Creutzfeldt Jakob Syndrome Associate 34635127
Crohn Disease Associate 29374777