Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
653361
Gene name Gene Name - the full gene name approved by the HGNC.
Neutrophil cytosolic factor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NCF1
Synonyms (NCBI Gene) Gene synonyms aliases
CGD1, NCF-1, NCF-47K, NCF1A, NOXO2, SH3PXD1A, p47-phox, p47phox
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CGD1
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q11.23
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a 47 kDa cytosolic subunit of neutrophil NADPH oxidase. This oxidase is a multicomponent enzyme that is activated to produce superoxide anion. Mutations in this gene have been associated with chronic granulomatous disea
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs4029402 GT>- Pathogenic Frameshift variant, coding sequence variant
rs119103270 G>A Pathogenic Missense variant, coding sequence variant
rs119103271 C>G,T Pathogenic Missense variant, coding sequence variant, stop gained
rs119103272 T>A Pathogenic Coding sequence variant, stop gained
rs119103273 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1176351 hsa-miR-1908 CLIP-seq
MIRT1176352 hsa-miR-4461 CLIP-seq
MIRT1176353 hsa-miR-663 CLIP-seq
Transcription factors
Transcription factor Regulation Reference
HBP1 Repression 15024088;18258815
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002479 Process Antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS
GO:0005515 Function Protein binding IPI 8280052, 11094157, 11733522, 12681507, 15657040, 16297854, 16326715, 16330715, 16375898, 16782902, 17803994, 19129478, 25825872, 25910212, 27040869, 32296183, 32814053
GO:0005737 Component Cytoplasm IBA 21873635
GO:0005791 Component Rough endoplasmic reticulum IEA
GO:0005794 Component Golgi apparatus IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
608512 7660 ENSG00000158517
Protein
UniProt ID P14598
Protein name Neutrophil cytosol factor 1 (NCF-1) (47 kDa autosomal chronic granulomatous disease protein) (47 kDa neutrophil oxidase factor) (NCF-47K) (Neutrophil NADPH oxidase factor 1) (Nox organizer 2) (Nox-organizing protein 2) (SH3 and PX domain-containing protei
Protein function Subunit of the phagocyte NADPH oxidase complex that mediates the transfer of electrons from cytosolic NADPH to O2 to produce the superoxide anion (O2(-)) (PubMed:2547247, PubMed:2550933, PubMed:38355798). In the activated complex, electrons are
PDB 1GD5 , 1K4U , 1KQ6 , 1NG2 , 1O7K , 1OV3 , 1UEC , 1W70 , 1WLP , 7YXW , 8WEJ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00787 PX 30 121 PX domain Domain
PF00018 SH3_1 162 207 SH3 domain Domain
PF00018 SH3_1 232 277 SH3 domain Domain
PF16621 NECFESHC 282 330 SH3 terminal domain of 2nd SH3 on Neutrophil cytosol factor 1 Disordered
PF08944 p47_phox_C 358 390 NADPH oxidase subunit p47Phox, C terminal domain Disordered
Tissue specificity TISSUE SPECIFICITY: Detected in peripheral blood monocytes and neutrophils (at protein level). {ECO:0000269|PubMed:2547247, ECO:0000269|PubMed:2550933}.
Sequence
Sequence length 390
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Chemokine signaling pathway
Phagosome
Osteoclast differentiation
Neutrophil extracellular trap formation
Fc gamma R-mediated phagocytosis
Leukocyte transendothelial migration
Prion disease
Leishmaniasis
Chemical carcinogenesis - reactive oxygen species
Diabetic cardiomyopathy
Lipid and atherosclerosis
Fluid shear stress and atherosclerosis
  ROS and RNS production in phagocytes
Cross-presentation of particulate exogenous antigens (phagosomes)
Detoxification of Reactive Oxygen Species
VEGFA-VEGFR2 Pathway
RHO GTPases Activate NADPH Oxidases
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Aortic aneurysm Aortic Aneurysm, Abdominal rs1555554098, rs267606902, rs121434526, rs121434527, rs121434528, rs387906592, rs387906781, rs387906782, rs397516685, rs397514037, rs112901682, rs397515325, rs397515330, rs794728025, rs112602953
View all (29 more)
16864727
Diabetes mellitus Diabetes Mellitus rs587776515, rs61730328, rs606231121, rs606231122, rs79020217, rs77625743, rs78378398, rs606231123, rs1362648752, rs104893649, rs80356624, rs80356616, rs80356625, rs80356611, rs104894237
View all (293 more)
23723366
Granulomatous disease Chronic granulomatous disease, Granulomatous Disease, Chronic, Autosomal Recessive, Cytochrome B-Positive, Type I, GRANULOMATOUS DISEASE, CHRONIC, AUTOSOMAL RECESSIVE, CYTOCHROME b-POSITIVE, TYPE III rs796065030, rs374402066, rs796065031, rs796065032, rs119103276, rs796065033, rs119103274, rs4029402, rs1563003964, rs119103270, rs1307080411, rs119103271, rs119103272, rs119103273, rs104894513
View all (100 more)
23910690, 11133775, 10706888, 24446915
Hypercholesterolemia Hypercholesterolemia rs28942111, rs28942112, rs137852912, rs121908025, rs28942082, rs28942083, rs121908028, rs121908030, rs28942079, rs28942084, rs121908032, rs387906302, rs387906303, rs121908033, rs121908034
View all (1161 more)
14871415
Unknown
Disease term Disease name Evidence References Source
Chronic obstructive pulmonary disease Chronic Obstructive Airway Disease ClinVar
Mycotic aneurysm, intracranial Mycotic Aneurysm, Intracranial 19381132 ClinVar
Osteomyelitis Osteomyelitis ClinVar
Otitis media Otitis Media ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Abortion Habitual Associate 37243946
Abortion Spontaneous Associate 37243946
Adenocarcinoma of Lung Associate 38204755
Anal Gland Neoplasms Associate 29454792
Androgen Insensitivity Syndrome Associate 30506560
Antiphospholipid Syndrome Associate 37243946
Aphasia Conduction Associate 39384978
Arthritis Associate 17897462
Arthritis Rheumatoid Associate 28135245, 31705128, 33892719
Atrial Fibrillation Stimulate 23916928