Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6529
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier family 6 member 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLC6A1
Synonyms (NCBI Gene) Gene synonyms aliases
GABATHG, GABATR, GAT1, MAE, hGAT-1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
MAE
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3p25.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a gamma-aminobutyric acid (GABA) transporter that localizes to the plasma membrane. The encoded protein removes GABA from the synaptic cleft, restoring it to presynaptic terminals. [provided by RefSeq, Jan 2017]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs745529755 C>A,T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs749240316 G>A,C Likely-pathogenic, pathogenic, uncertain-significance Coding sequence variant, missense variant
rs752396911 G>A,C,T Pathogenic Coding sequence variant, missense variant
rs794726860 C>T Pathogenic-likely-pathogenic, likely-pathogenic Missense variant, coding sequence variant
rs876657400 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT490368 hsa-miR-4779 PAR-CLIP 20371350
MIRT490366 hsa-miR-211-3p PAR-CLIP 20371350
MIRT490365 hsa-miR-151a-5p PAR-CLIP 20371350
MIRT490364 hsa-miR-151b PAR-CLIP 20371350
MIRT490363 hsa-miR-4285 PAR-CLIP 20371350
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005332 Function Gamma-aminobutyric acid:sodium symporter activity IBA 21873635
GO:0005332 Function Gamma-aminobutyric acid:sodium symporter activity IDA 10973981
GO:0005515 Function Protein binding IPI 29997244, 32296183
GO:0005886 Component Plasma membrane IDA 10973981
GO:0005886 Component Plasma membrane TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
137165 11042 ENSG00000157103
Protein
UniProt ID P30531
Protein name Sodium- and chloride-dependent GABA transporter 1 (GAT-1) (Solute carrier family 6 member 1)
Protein function Mediates transport of gamma-aminobutyric acid (GABA) together with sodium and chloride and is responsible for the reuptake of GABA from the synapse (PubMed:30132828). The translocation of GABA, however, may also occur in the reverse direction le
PDB 7SK2 , 7Y7V , 7Y7W , 7Y7Y , 7Y7Z
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00209 SNF 44 559 Sodium:neurotransmitter symporter family Family
Sequence
Sequence length 599
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Synaptic vesicle cycle
GABAergic synapse
  Na+/Cl- dependent neurotransmitter transporters
Reuptake of GABA
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyotrophic lateral sclerosis Amyotrophic Lateral Sclerosis, Amyotrophic Lateral Sclerosis, Guam Form rs267607084, rs312262720, rs312262752, rs121908287, rs121908288, rs29001584, rs28941475, rs121434378, rs386134173, rs386134174, rs80356730, rs80356727, rs4884357, rs80356717, rs80356733
View all (171 more)
20132478
Angelman syndrome Angelman Syndrome rs111033595, rs111033596, rs111033597, rs2147483647, rs28934904, rs267608434, rs28935468, rs61748396, rs398124440, rs587780565, rs587780566, rs587780567, rs587780568, rs587780569, rs587780570
View all (136 more)
Autism Autistic behavior rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Mental depression Mental Depression, Depressive disorder 17164814, 20016099 ClinVar
Myoclonic-Astatic Epilepsy myoclonic-astatic epilepsy GenCC
Ovarian cancer Ovarian cancer Conditional KD of IL6 in the OCCA xenograft model delays tumor growth GWAS, CBGDA
Glioblastoma Glioblastoma CRISPR screening of E3 ubiquitin ligases reveals Ring Finger Protein 185 as a novel tumor suppressor in glioblastoma repressed by promoter hypermethylation and miR-587 GWAS, CBGDA
Associations from Text Mining
Disease Name Relationship Type References
Alcohol Related Disorders Associate 35761184
Alcoholism Associate 26727527
Alzheimer Disease Associate 37264161
Anxiety Associate 18607529
Anxiety Disorders Associate 18607529
Aortic Valve Stenosis Associate 32375772
Ataxia Associate 29315614
Attention Deficit Disorder with Hyperactivity Associate 23527680, 32375772
Auditory Perceptual Disorders Associate 23527680
Autistic Disorder Associate 33527113, 34028503, 35761184