Gene Gene information from NCBI Gene database.
Entrez ID 6505
Gene name Solute carrier family 1 member 1
Gene symbol SLC1A1
Synonyms (NCBI Gene)
DCBXAEAAC1EAAT3SCZD18hEAAC1
Chromosome 9
Chromosome location 9p24.2
Summary This gene encodes a member of the high-affinity glutamate transporters that play an essential role in transporting glutamate across plasma membranes. In brain, these transporters are crucial in terminating the postsynaptic action of the neurotransmitter g
miRNA miRNA information provided by mirtarbase database.
130
miRTarBase ID miRNA Experiments Reference
MIRT018599 hsa-miR-335-5p Microarray 18185580
MIRT054678 hsa-miR-96-5p ImmunohistochemistryLuciferase reporter assayqRT-PCR 24304186
MIRT107790 hsa-miR-186-5p HITS-CLIP 23824327
MIRT649692 hsa-miR-652-5p HITS-CLIP 23824327
MIRT107791 hsa-miR-500a-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
141
GO ID Ontology Definition Evidence Reference
GO:0001662 Process Behavioral fear response IEA
GO:0001975 Process Response to amphetamine IEA
GO:0002027 Process Regulation of heart rate IEA
GO:0005253 Function Monoatomic anion channel activity IEA
GO:0005313 Function L-glutamate transmembrane transporter activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
133550 10939 ENSG00000106688
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P43005
Protein name Excitatory amino acid transporter 3 (Excitatory amino-acid carrier 1) (Neuronal and epithelial glutamate transporter) (Sodium-dependent glutamate/aspartate transporter 3) (Solute carrier family 1 member 1)
Protein function Sodium-dependent, high-affinity amino acid transporter that mediates the uptake of L-glutamate and also L-aspartate and D-aspartate (PubMed:21123949, PubMed:26690923, PubMed:33658209, PubMed:7521911, PubMed:7914198, PubMed:8857541). Can also tra
PDB 6S3Q , 6X2L , 6X2Z , 6X3E , 6X3F , 7NSG , 8CTC , 8CTD , 8CUA , 8CUD , 8CUI , 8CUJ , 8CV2 , 8CV3 , 9D66 , 9D67 , 9D68 , 9D69 , 9D6A
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00375 SDF 20 465 Sodium:dicarboxylate symporter family Family
Tissue specificity TISSUE SPECIFICITY: Expressed in all tissues tested including liver, muscle, testis, ovary, retinoblastoma cell line, neurons and brain (in which there was dense expression in substantia nigra, red nucleus, hippocampus and in cerebral cortical layers). {E
Sequence
Sequence length 524
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Synaptic vesicle cycle
Glutamatergic synapse
Protein digestion and absorption
  Glutamate Neurotransmitter Release Cycle
Transport of inorganic cations/anions and amino acids/oligopeptides
Defective SLC1A1 is implicated in schizophrenia 18 (SCZD18) and dicarboxylic aminoaciduria (DCBXA)
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
131
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cerebral visual impairment and intellectual disability Likely pathogenic rs755579388 RCV000210380
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Dicarboxylic aminoaciduria Uncertain significance; no classifications from unflagged records; Likely benign; Benign; Conflicting classifications of pathogenicity rs368368579, rs587777696, rs587777697, rs12000219, rs2228621, rs142903137, rs774710357, rs886063965, rs764152210, rs77785435, rs886063969, rs182923521, rs886063973, rs886063974, rs886063975
View all (104 more)
RCV001336641
RCV000143976
RCV000143977
RCV000291056
RCV000274032
RCV000333800
RCV000290639
RCV000271878
RCV000358472
RCV000282336
RCV000387239
RCV000358710
RCV000305535
RCV000353458
RCV000260923
RCV000273817
RCV000389494
RCV000383598
RCV000291757
RCV000339662
RCV000393133
RCV000407345
RCV000299576
RCV000369737
RCV000402585
RCV000323263
RCV000380189
RCV000278629
RCV000317412
RCV000374531
RCV000294792
RCV000352043
RCV000403518
RCV000331206
RCV000288141
RCV000345324
RCV000304765
RCV000381127
RCV000283240
RCV000376959
RCV000287181
RCV000342193
RCV000279329
RCV000336709
RCV000370193
RCV000364362
RCV000329360
RCV000266171
RCV000349079
RCV000345996
RCV000301539
RCV000266774
RCV000375222
RCV000345145
RCV000345939
RCV000368342
RCV000270452
RCV000325722
RCV000384977
RCV000322223
RCV000391001
RCV000310943
RCV000405089
RCV000307381
RCV000307575
RCV000393965
RCV000318232
RCV003990555
RCV000760246
RCV001253950
RCV001169603
RCV001253891
RCV001167150
RCV001165488
RCV001253949
RCV001253892
RCV001253893
RCV001253894
RCV001165551
RCV001165553
RCV001165554
RCV001167148
RCV001167152
RCV001167153
RCV001167728
RCV001167729
RCV001167730
RCV001167731
RCV001165630
RCV001165631
RCV001167217
RCV001167218
RCV001167219
RCV001167220
RCV001167799
RCV001167800
RCV001167801
RCV001167802
RCV001167803
RCV001169672
RCV001169673
RCV001169674
RCV001169675
RCV001169676
RCV001165686
RCV001165687
RCV001165688
RCV001167280
RCV001167281
RCV001167282
RCV001167869
RCV001167870
RCV001167871
RCV001169741
RCV001169742
RCV001169743
RCV001167086
RCV001165552
RCV001167149
RCV001167151
RCV001196460
Ovarian serous cystadenocarcinoma Uncertain significance rs370778464 RCV005908859
Schizophrenia 18 no classifications from unflagged records; Likely benign; Uncertain significance rs587777697, rs1290975121, rs200971678 RCV005042281
RCV000760246
RCV005039985
SLC1A1-related disorder Benign; Conflicting classifications of pathogenicity; Likely benign; Uncertain significance rs2228621, rs143022823, rs371266520, rs142648085, rs34342853 RCV003932522
RCV003912581
RCV003917396
RCV003907347
RCV003908420
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenoma Associate 32566650
Alzheimer Disease Associate 18624794
Alzheimer Disease Inhibit 21743130
Anxiety Associate 20155310
Anxiety Disorders Associate 20155310, 32507125
Autism Spectrum Disorder Associate 19360657, 20155310, 31209396
Autistic Disorder Associate 19360657
Breast Neoplasms Associate 38310106
Carcinoma Renal Cell Associate 30862152
Colitis Ulcerative Associate 32566650