Gene Gene information from NCBI Gene database.
Entrez ID 65018
Gene name PTEN induced kinase 1
Gene symbol PINK1
Synonyms (NCBI Gene)
BRPKPARK6
Chromosome 1
Chromosome location 1p36.12
Summary This gene encodes a serine/threonine protein kinase that localizes to mitochondria. It is thought to protect cells from stress-induced mitochondrial dysfunction. Mutations in this gene cause one form of autosomal recessive early-onset Parkinson disease. [
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs45604240 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs74315357 C>A,T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs74315360 C>A Pathogenic Missense variant, coding sequence variant
rs756677845 G>- Pathogenic Frameshift variant, coding sequence variant
rs756783990 C>A Pathogenic Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
154
miRTarBase ID miRNA Experiments Reference
MIRT1235378 hsa-miR-2116 CLIP-seq
MIRT1235379 hsa-miR-3605-5p CLIP-seq
MIRT1235380 hsa-miR-4659a-5p CLIP-seq
MIRT1235381 hsa-miR-4659b-5p CLIP-seq
MIRT1235382 hsa-miR-4677-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
155
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000287 Function Magnesium ion binding IDA 14607334
GO:0000287 Function Magnesium ion binding IEA
GO:0000422 Process Autophagy of mitochondrion IBA
GO:0000422 Process Autophagy of mitochondrion IMP 20798600, 23933751, 24896179
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608309 14581 ENSG00000158828
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BXM7
Protein name Serine/threonine-protein kinase PINK1, mitochondrial (EC 2.7.11.1) (BRPK) (PTEN-induced putative kinase protein 1)
Protein function Serine/threonine-protein kinase which acts as a sensor of mitochondrial damage and protects against mitochondrial dysfunction during cellular stress. It phosphorylates mitochondrial proteins to coordinate mitochondrial quality control mechanisms
PDB 9EIH , 9EII , 9EIJ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00069 Pkinase 264 509 Protein kinase domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in heart, skeletal muscle and testis, and at lower levels in brain, placenta, liver, kidney, pancreas, prostate, ovary and small intestine. Present in the embryonic testis from an early stage of development. {ECO:00002
Sequence
MAVRQALGRGLQLGRALLLRFTGKPGRAYGLGRPGPAAGCVRGERPGWAAGPGAEPRRVG
LGLPNRLRFFRQSVAGLAARLQRQFVVRAWGCAGPCGRAVFLAFGLGLGLIEEKQAESRR
AVSACQEIQAIFTQKSKPGPDPLDTRRLQGFRLEEYLIGQSIGKGCSAAVYEATMPTLPQ
NLEVTKSTGLLPGRGPGTSAPGEGQERAPGAPAFPLAIKMMWNISAGSSSEAILNTMSQE
LVPASRVALAGEYGAVTYRKSKRGPKQLAPHPNIIRVLRAFTSSVPLLPGALVDYPDVLP
SRLHPEGLGHGRTLFLVMKNYPCTLRQYLCVNTPSPRLAAMMLLQLLEGVDHLVQQGIAH
RDLKSDNILVELDPDGCPWLVIADFGCCLADESIGLQLPFSSWYVDRGGNGCLMAPEVST
ARPGPRAVIDYSKADAWAVGAIAYEIFGLVNPFYGQGKAHLESRSYQEAQLPALPESVPP
DVRQLVRALLQREASKRPSARVAANVLHL
SLWGEHILALKNLKLDKMVGWLLQQSAATLL
ANRLTEKCCVETKMKMLFLANLECETLCQAALLLCSWRAAL
Sequence length 581
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Mitophagy - animal
Parkinson disease
Amyotrophic lateral sclerosis
Pathways of neurodegeneration - multiple diseases
  Pink/Parkin Mediated Mitophagy
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
352
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal recessive early-onset Parkinson disease 6 Pathogenic; Likely pathogenic rs775479526, rs1480758482, rs2154533643, rs74315355, rs28940284, rs74315356, rs74315357, rs28940285, rs730880302, rs750664040, rs74315359, rs74315360, rs45539432, rs756677845, rs775809722
View all (19 more)
RCV001917853
RCV001960635
RCV001915142
RCV000002505
RCV000002506
RCV000002507
RCV000002508
RCV000002509
RCV000002510
RCV000002511
RCV000002514
RCV000002515
RCV000002516
RCV000169671
RCV002630051
RCV002857327
RCV002908184
RCV002913039
RCV003027398
RCV003388717
RCV005104287
RCV003497597
RCV003604241
RCV003604966
RCV003604567
RCV004577291
RCV000814157
RCV000705048
RCV000778216
RCV000778217
RCV000818442
RCV000822134
RCV001202589
RCV001235370
Parkinson disease, autosomal recessive early-onset, digenic, PINK1/DJ1 Pathogenic rs119451946 RCV000002518
PINK1-related disorder Pathogenic; Likely pathogenic rs775479526, rs45539432, rs2545259625, rs34208370 RCV004741132
RCV004739278
RCV003397247
RCV004740269
Thymoma Pathogenic rs34208370 RCV005899800
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Likely benign rs144719866 RCV005919059
Clear cell carcinoma of kidney Benign rs115477764 RCV005895738
Colon adenocarcinoma Benign rs115477764 RCV005895736
Familial cancer of breast Uncertain significance; Conflicting classifications of pathogenicity rs758604046, rs192131551 RCV005923930
RCV005895862
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acute Kidney Injury Associate 33494815
Adenocarcinoma Associate 29937472, 34252349
Adenocarcinoma of Lung Associate 29937472, 40243539
Adrenocortical Carcinoma Associate 30770352
Affective Disorders Psychotic Associate 17202228
Aggressive Periodontitis Associate 29995846
Alzheimer Disease Associate 21145388, 26721933, 29091718, 33998543
Alzheimer's disease without Neurofibrillary tangles Associate 25899925
Amyotrophic Lateral Sclerosis Associate 26365381, 32779864, 36379251
Attention Deficit Disorder with Hyperactivity Associate 29413154