Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6487
Gene name Gene Name - the full gene name approved by the HGNC.
ST3 beta-galactoside alpha-2,3-sialyltransferase 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ST3GAL3
Synonyms (NCBI Gene) Gene synonyms aliases
DEE15, EIEE15, MRT12, SIAT6, ST3GALII, ST3Gal III, ST3GalIII, ST3N
Disease Acronyms (UniProt) Disease acronyms from UniProt database
DEE15, MRT12
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p34.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a type II membrane protein that catalyzes the transfer of sialic acid from CMP-sialic acid to galactose-containing substrates. The encoded protein is normally found in the Golgi apparatus but can be proteolytically proc
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs115003742 C>T Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Non coding transcript variant, synonymous variant, intron variant, coding sequence variant
rs147330005 G>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, 5 prime UTR variant, non coding transcript variant, coding sequence variant, intron variant, genic upstream transcript variant
rs201204481 C>T Conflicting-interpretations-of-pathogenicity, likely-benign Intron variant, coding sequence variant, synonymous variant, non coding transcript variant
rs387906943 C>A Pathogenic Genic upstream transcript variant, non coding transcript variant, coding sequence variant, 5 prime UTR variant, missense variant
rs553120567 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Downstream transcript variant, synonymous variant, 3 prime UTR variant, non coding transcript variant, coding sequence variant, genic downstream transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1393517 hsa-miR-1285 CLIP-seq
MIRT1393518 hsa-miR-1302 CLIP-seq
MIRT1393519 hsa-miR-138 CLIP-seq
MIRT1393520 hsa-miR-2861 CLIP-seq
MIRT1393521 hsa-miR-3158-3p CLIP-seq
Transcription factors
Transcription factor Regulation Reference
MYC Activation 22547830
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0005515 Function Protein binding IPI 32814053
GO:0005576 Component Extracellular region IEA
GO:0006486 Process Protein glycosylation IBA 21873635
GO:0008118 Function N-acetyllactosaminide alpha-2,3-sialyltransferase activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606494 10866 ENSG00000126091
Protein
UniProt ID Q11203
Protein name CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase (EC 2.4.3.6) (Beta-galactoside alpha-2,3-sialyltransferase 3) (Alpha 2,3-ST 3) (Gal beta-1,3(4) GlcNAc alpha-2,3 sialyltransferase) (N-acetyllactosaminide alpha-2,3-sialyltransferase
Protein function Catalyzes the formation of the NeuAc-alpha-2,3-Gal-beta-1,4-GlcNAc-, NeuAc-alpha-2,3-Gal-beta-1,3-GlcNAc- and NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- sequences found in terminal carbohydrate groups of glycoproteins and glycolipids. The highest acti
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00777 Glyco_transf_29 107 372 Glycosyltransferase family 29 (sialyltransferase) Family
Tissue specificity TISSUE SPECIFICITY: Highly expressed in adult skeletal muscle and in all fetal tissues examined and to a much lesser extent in placenta, lung and liver.
Sequence
Sequence length 375
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Various types of N-glycan biosynthesis
Other types of O-glycan biosynthesis
Mannose type O-glycan biosynthesis
Glycosaminoglycan biosynthesis - keratan sulfate
Glycosphingolipid biosynthesis - lacto and neolacto series
Metabolic pathways
  Keratan sulfate biosynthesis
Defective ST3GAL3 causes MCT12 and EIEE15
Sialic acid metabolism
Lewis blood group biosynthesis
Termination of O-glycan biosynthesis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyotrophic lateral sclerosis Amyotrophic Lateral Sclerosis rs267607084, rs312262720, rs312262752, rs121908287, rs121908288, rs29001584, rs28941475, rs121434378, rs386134173, rs386134174, rs80356730, rs80356727, rs4884357, rs80356717, rs80356733
View all (171 more)
22959728
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019 29325848
Autism Autistic behavior rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Mental depression Depressive disorder ClinVar
Infantile Spasms infantile spasms GenCC
Non-Syndromic Intellectual Disability autosomal recessive non-syndromic intellectual disability GenCC
Neurodevelopmental Disorders complex neurodevelopmental disorder GenCC
Associations from Text Mining
Disease Name Relationship Type References
Amyotrophic Lateral Sclerosis Associate 22959728
Arthritis Rheumatoid Associate 36405992
Attention Deficit Disorder with Hyperactivity Associate 27217153
Attention Deficit Disorder with Hyperactivity Stimulate 32366953
Breast Neoplasms Associate 12841680
Carcinoma Pancreatic Ductal Associate 32872308
Cataract Age Related Nuclear Associate 34954695
Colorectal Neoplasms Associate 10673297
Inflammation Associate 36405992
Intellectual Disability Associate 21907012, 27217153