Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6453
Gene name Gene Name - the full gene name approved by the HGNC.
Intersectin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ITSN1
Synonyms (NCBI Gene) Gene synonyms aliases
ITSN, SH3D1A, SH3P17
Chromosome Chromosome number
21
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
21q22.11
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a cytoplasmic membrane-associated protein that indirectly coordinates endocytic membrane traffic with the actin assembly machinery. In addition, the encoded protein may regulate the formation of clathrin-coated vesicles
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs755276554 G>A,T Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT038428 hsa-miR-296-3p CLASH 23622248
MIRT438158 hsa-miR-194-5p Luciferase reporter assay 24197061
MIRT438158 hsa-miR-194-5p Luciferase reporter assay 24197061
MIRT438158 hsa-miR-194-5p Luciferase reporter assay 24197061
MIRT438158 hsa-miR-194-5p Luciferase reporter assay 24197061
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005085 Function Guanyl-nucleotide exchange factor activity NAS 9799604
GO:0005509 Function Calcium ion binding NAS 9799604
GO:0005515 Function Protein binding IPI 10064583, 12006984, 12812986, 16696976, 16914641, 18654987, 20448150, 20946875, 21900206, 29887380, 31413325, 32203420
GO:0005635 Component Nuclear envelope IEA
GO:0005737 Component Cytoplasm IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602442 6183 ENSG00000205726
Protein
UniProt ID Q15811
Protein name Intersectin-1 (SH3 domain-containing protein 1A) (SH3P17)
Protein function Adapter protein that provides a link between the endocytic membrane traffic and the actin assembly machinery (PubMed:11584276, PubMed:29887380). Acts as a guanine nucleotide exchange factor (GEF) for CDC42, and thereby stimulates actin nucleatio
PDB 1KI1 , 2KGR , 2KHN , 3FIA , 3QBV , 4IIM , 5HZI , 5HZJ , 5HZK , 6GBU , 6H5T
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12763 EF-hand_4 16 108 Cytoskeletal-regulatory complex EF hand Family
PF12763 EF-hand_4 216 312 Cytoskeletal-regulatory complex EF hand Family
PF14604 SH3_9 747 802 Variant SH3 domain Domain
PF16617 INTAP 803 917 Disordered
PF00018 SH3_1 919 963 SH3 domain Domain
PF07653 SH3_2 1007 1057 Variant SH3 domain Domain
PF07653 SH3_2 1078 1136 Variant SH3 domain Domain
PF00018 SH3_1 1161 1206 SH3 domain Domain
PF00621 RhoGEF 1241 1421 RhoGEF domain Domain
PF16652 PH_13 1440 1593 Pleckstrin homology domain Domain
PF00168 C2 1596 1696 C2 domain Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is expressed almost exclusively in the brain. Isoform 2 is detected in brain, spleen, lung, liver, heart, skeletal muscle and kidney. Isoform 5 is primarily expressed in brain, spleen, lung and kidney (at protein level) (PubM
Sequence
MAQFPTPFGGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQ
IWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVA
ISSAPAFGMGGI
ASMPPLTAVAPVPMGSIPVVGMSPTLVSSVPTAAVPPLANGAPPVIQPLPAFAHPAATLP
KSSSFSRSGPGSQLNTKLQKAQSFDVASVPPVAEWAVPQSSRLKYRQLFNSHDKTMSGHL
TGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLP
PEYIPPSFRRVR
SGSGISVISSTSVDQRLPEEPVLEDEQQQLEKKLPVTFEDKKRENFER
GNLELEKRRQALLEQQRKEQERLAQLERAEQERKERERQEQERKRQLELEKQLEKQRELE
RQREEERRKEIERREAAKRELERQRQLEWERNRRQELLNQRNKEQEDIVVLKAKKKTLEF
ELEALNDKKHQLEGKLQDIRCRLTTQRQEIESTNKSRELRIAEITHLQQQLQESQQMLGR
LIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQEI
DIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQKEEAQRRAQERDKQW
LEHVQQEDEHQRPRKLHEEEKLKREESVKKKDGEEKGKQEAQDKLGRLFHQHQEPAKPAV
QAPWSTAEKGPLTISAQENVKVVYYRALYPFESRSHDEITIQPGDIVMVKGEWVDESQTG
EPGWLGGELKGKTGWFPANYAE
KIPENEVPAPVKPVTDSTSAPAPKLALRETPAPLAVTS
SEPSTTPNNWADFSSTWPTSTNEKPETDNWDAWAAQPSLTVPSAGQLRQRSAFTPATATG
SSPSPVLGQGEKVEGLQ
AQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGW
FPK
SYVKLISGPIRKSTSMDSGSSESPASLKRVASPAAKPVVSGEEFIAMYTYESSEQGD
LTFQQGDVILVTKKDGDWWTGTVGDKAGVFPSNYVRL
KDSEGSGTAGKTGSLGKKPEIAQ
VIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVKLL
SPGT
SKITPTEPPKSTALAAVCQVIGMYDYTAQNDDELAFNKGQIINVLNKEDPDWWKGEVNGQ
VGLFPS
NYVKLTTDMDPSQQWCSDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVT
EIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILS
AQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQ
RVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVN
EGVREKENSDRLEWIQAHV
QCEGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKSNKELYGFLFNDFLLLTQITKPLGSSG
TDKVFSPKSNLQYKMYKTPIFLNEVLVKLPTDPSGDEPIFHISHIDRVYTLRAESINERT
AWVQKIKAASELYIETEKKKREKAYLVRSQRAT
GIGRLMVNVVEGIELKPCRSHGKSNPY
CEVTMGSQCHITKTIQDTLNPKWNSNCQFFIRDLEQEVLCITVFERDQFSPDDFLGRTEI
RVADIKKDQGSKGPVT
KCLLLHEVPTGEIVVRLDLQLFDEP
Sequence length 1721
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    NRAGE signals death through JNK
Rho GTPase cycle
EPHB-mediated forward signaling
G alpha (12/13) signalling events
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Prostate cancer Malignant neoplasm of prostate rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 29610475
Unknown
Disease term Disease name Evidence References Source
Glioblastoma Glioblastoma CRISPR screening of E3 ubiquitin ligases reveals Ring Finger Protein 185 as a novel tumor suppressor in glioblastoma repressed by promoter hypermethylation and miR-587 GWAS, CBGDA
Schizophrenia Schizophrenia GWAS
Associations from Text Mining
Disease Name Relationship Type References
Autism Spectrum Disorder Associate 34707297
Autistic Disorder Associate 35982159
Autoimmune Diseases Associate 34406596
Cognition Disorders Associate 35982159
Crohn Disease Associate 32547537
Developmental Disabilities Associate 34707297
Down Syndrome Associate 38095646
Epilepsy Associate 34707297
Esophageal atresia with or without tracheoesophageal fistula Associate 32641753
Essential Hypertension Associate 28682143