Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
64405
Gene name Gene Name - the full gene name approved by the HGNC.
Cadherin 22
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CDH22
Synonyms (NCBI Gene) Gene synonyms aliases
C20orf25, dJ998H6.1
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20q13.12
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the cadherin superfamily. The gene product is composed of five cadherin repeat domains and a cytoplasmic tail similar to the highly conserved cytoplasmic region of classical cadherins. Expressed predominantly in the brain, this pu
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT440967 hsa-miR-412-3p HITS-CLIP 24374217
MIRT440967 hsa-miR-412-3p HITS-CLIP 24374217
MIRT879777 hsa-miR-3164 CLIP-seq
MIRT879778 hsa-miR-3616-5p CLIP-seq
MIRT879779 hsa-miR-3647-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IBA 21873635
GO:0005509 Function Calcium ion binding IBA 21873635
GO:0005912 Component Adherens junction IBA 21873635
GO:0007043 Process Cell-cell junction assembly IBA 21873635
GO:0007156 Process Homophilic cell adhesion via plasma membrane adhesion molecules IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
609920 13251 ENSG00000149654
Protein
UniProt ID Q9UJ99
Protein name Cadherin-22 (Pituitary and brain cadherin) (PB-cadherin)
Protein function Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. PB-cadherins may have a ro
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin 67 159 Cadherin domain Domain
PF00028 Cadherin 173 268 Cadherin domain Domain
PF00028 Cadherin 282 386 Cadherin domain Domain
PF00028 Cadherin 400 490 Cadherin domain Domain
PF00028 Cadherin 503 600 Cadherin domain Domain
PF01049 Cadherin_C 648 819 Cadherin cytoplasmic region Family
Sequence
MRPRPEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSPSAPGARQDGALGAGRV
KRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGAIKYTISGEGAGTIFLIDELTGDIH
AMERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQ
DINDSEPRFLHGPYIGSVAEL
SPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQER
YEVVIQATDMAGQLGGLSGSTTVTIVVT
DVNDNPPRFPQKMYQFSIQESAPIGTAVGRVK
AEDSDVGENTDMTYHLKDESSSGGDVFKVTTDSDTQEAIIVVQKRLDFESQPVHTVILEA
LNKFVDPRFADLGTFRDQAIVRVAVT
DVDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARD
PDAANRPVRYAIDRESDLDQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQL
SRASLRIRIL
DVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVP
EAPSNPHFSLLDIQDNTAAVHTQHVGFNRQEQDVFFLPILVVDSGPPTLSSTGTLTIRIC

GCDSSGTIQSCNTTAFVMAASLSPGALIALLVCVLILVVLVLLILTLRRHHKSHLSSDED
EDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDGGGSAGGGAGGGSGGGAGS
PPQAHLPSERHSLPQGPPSPEPDFSVFRDFISRKVALADGDLSVPPYDAFQTYAFEGADS
PAASLSSLHSGSSGSEQDFAYLSSWGPRFRPLAALYAGH
RGDDEAQAS
Sequence length 828
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
25944804
Colorectal neoplasms Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
25944804
Unknown
Disease term Disease name Evidence References Source
Neuroticism Neuroticism GWAS
Metabolic Syndrome Metabolic Syndrome GWAS
Glioma Glioma Knockdown of lncGRS-1, a primate-conserved, nuclear-enriched lncRNA, inhibits the growth and proliferation of primary adult and pediatric glioma cells, but not the viability of normal brain cells. GWAS, CBGDA
Glioblastoma Glioblastoma CRISPR screening of E3 ubiquitin ligases reveals Ring Finger Protein 185 as a novel tumor suppressor in glioblastoma repressed by promoter hypermethylation and miR-587 GWAS, CBGDA
Associations from Text Mining
Disease Name Relationship Type References
Breast Neoplasms Inhibit 28149335
Colorectal Neoplasms Associate 28149335
Diabetes Mellitus Type 2 Associate 18602983
Hypoxia Stimulate 28991229
Kidney Failure Chronic Associate 18602983
Mucocutaneous Lymph Node Syndrome Associate 25101798
Neoplasm Metastasis Associate 28149335
Neoplasms Associate 28991229