Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
64321
Gene name Gene Name - the full gene name approved by the HGNC.
SRY-box transcription factor 17
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SOX17
Synonyms (NCBI Gene) Gene synonyms aliases
PPH7, VUR3
Disease Acronyms (UniProt) Disease acronyms from UniProt database
VUR3
Chromosome Chromosome number
8
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8q11.23
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after for
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs267607082 G>A,C,T Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs1586329828 CTGGGCCCCGAGGGCGGCCGCG>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT054849 hsa-miR-335-5p Luciferase reporter assay, qRT-PCR, Western blot 24449834
MIRT723987 hsa-miR-200a-5p HITS-CLIP 19536157
MIRT723986 hsa-miR-200b-5p HITS-CLIP 19536157
MIRT723985 hsa-miR-134-5p HITS-CLIP 19536157
MIRT723984 hsa-miR-3118 HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding ISS
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA 21873635
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
610928 18122 ENSG00000164736
Protein
UniProt ID Q9H6I2
Protein name Transcription factor SOX-17
Protein function Acts as a transcription regulator that binds target promoter DNA and bends the DNA. Binds to the sequences 5'-AACAAT-'3 or 5'-AACAAAG-3'. Modulates transcriptional regulation via WNT3A. Inhibits Wnt signaling. Promotes degradation of activated C
PDB 2YUL , 4A3N
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00505 HMG_box 68 136 HMG (high mobility group) box Domain
PF12067 Sox17_18_mid 203 253 Sox 17/18 central domain Family
Tissue specificity TISSUE SPECIFICITY: Expressed in adult heart, lung, spleen, testis, ovary, placenta, fetal lung, and kidney. In normal gastrointestinal tract, it is preferentially expressed in esophagus, stomach and small intestine than in colon and rectum. {ECO:0000269|
Sequence
MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAG
RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYK
YRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG
LQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAP
MPGDCPAAGTYSY
AQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAM
GSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDR
TEFEQYLHFVCKPEMGLPYQGHDSGVNLPDSHGAISSVVSDASSAVYYCNYPDV
Sequence length 414
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Wnt signaling pathway   Deactivation of the beta-catenin transactivating complex
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
18413743
Colorectal neoplasms Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
18413743
Pulmonary hypertension Familial primary pulmonary hypertension rs5030847, rs5030850, rs753751183, rs121912592, rs121912593, rs121912596, rs121918359, rs137852741, rs137852742, rs137852743, rs137852744, rs137852745, rs137852746, rs137852747, rs137852748
View all (349 more)
30044643
Vesicoureteral reflux Vesico-Ureteral Reflux, VESICOURETERAL REFLUX 3, Vesicoureteral Reflux 1, Familial vesicoureteral reflux rs587777684, rs148731211 20960469
Unknown
Disease term Disease name Evidence References Source
Vesicoureteral Reflux familial vesicoureteral reflux GenCC
Pulmonary arterial hypertension pulmonary arterial hypertension GenCC
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 35618278
Adenocarcinoma Associate 31444787
Adenocarcinoma Inhibit 39522642
Adenocarcinoma in Situ Associate 31444787
Adenoma Inhibit 18413743
Adenoma Associate 21154739, 27245242
Adenoma Villous Associate 21154739
Breast Neoplasms Associate 20040597, 25789956, 27449045
Breast Neoplasms Inhibit 25971583, 27188720
Brenner Tumor Associate 36788073