Gene Gene information from NCBI Gene database.
Entrez ID 64146
Gene name Peptide deformylase, mitochondrial
Gene symbol PDF
Synonyms (NCBI Gene)
-
Chromosome 16
Chromosome location 16q22.1
Summary Protein synthesis proceeds after formylation of methionine by methionyl-tRNA formyl transferase (FMT) and transfer of the charged initiator f-met tRNA to the ribosome. In eubacteria and eukaryotic organelles the product of this gene, peptide deformylase (
miRNA miRNA information provided by mirtarbase database.
307
miRTarBase ID miRNA Experiments Reference
MIRT031468 hsa-miR-16-5p Proteomics 18668040
MIRT677432 hsa-miR-543 HITS-CLIP 23824327
MIRT634432 hsa-miR-383-3p HITS-CLIP 23824327
MIRT677431 hsa-miR-4284 HITS-CLIP 23824327
MIRT677430 hsa-miR-24-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
13
GO ID Ontology Definition Evidence Reference
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IBA
GO:0005739 Component Mitochondrion IDA 15489958
GO:0005739 Component Mitochondrion IEA
GO:0006412 Process Translation IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
618720 30012 ENSG00000258429
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9HBH1
Protein name Peptide deformylase, mitochondrial (EC 3.5.1.88) (Polypeptide deformylase)
Protein function Removes the formyl group from the N-terminal Met of newly synthesized proteins.
PDB 3G5K , 3G5P
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01327 Pep_deformylase 64 234 Polypeptide deformylase Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14532271}.
Sequence
Sequence length 243
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
2
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIH Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDERS OF GLYCOSYLATION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Breast Neoplasms Associate 23815882
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Stimulate 23815882
★☆☆☆☆
Found in Text Mining only
Hereditary Breast and Ovarian Cancer Syndrome Stimulate 23815882
★☆☆☆☆
Found in Text Mining only
Lung Neoplasms Stimulate 23815882
★☆☆☆☆
Found in Text Mining only
Neoplasms Associate 23815882, 24589236
★☆☆☆☆
Found in Text Mining only