BLM (BLM RecQ like helicase)

Gene

• Entrez ID: 641
• Gene name: BLM RecQ like helicase
• Gene symbol: BLM
• Synonyms (NCBI Gene): BS, MGRISCE1, RECQ2, RECQL2, RECQL3
• Chromosome: 15
• Chromosome location: 15q26.1
• Summary: The Bloom syndrome is an autosomal recessive disorder characterized by growth deficiency, microcephaly and immunodeficiency among others. It is caused by homozygous or compound heterozygous mutation in the gene encoding DNA helicase RecQ protein on chromo

SNPs

SNP ID	Visualize variation	Clinical significance	Consequence
rs1801256	T>A	Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance	Missense variant, genic downstream transcript variant, coding sequence variant, intron variant
rs12720097	G>A	Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity	5 prime UTR variant, missense variant, coding sequence variant
rs28377085	A>G	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Synonymous variant, genic downstream transcript variant, coding sequence variant
rs35224686	A>G	Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity	Genic upstream transcript variant, missense variant, upstream transcript variant, coding sequence variant
rs56257041	G>A	Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity	Genic upstream transcript variant, upstream transcript variant, synonymous variant, coding sequence variant
rs113993962	ATCTGA>TAGATTC	Pathogenic	Coding sequence variant, frameshift variant
rs137853153	G>T	Pathogenic	Missense variant, coding sequence variant, genic downstream transcript variant
rs138831180	T>G	Likely-benign, benign-likely-benign, conflicting-interpretations-of-pathogenicity	Coding sequence variant, synonymous variant, genic downstream transcript variant
rs138943954	C>A,G,T	Pathogenic	Coding sequence variant, stop gained, upstream transcript variant, missense variant, genic upstream transcript variant
rs139610577	C>G	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs140382474	A>C,G,T	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Coding sequence variant, upstream transcript variant, missense variant, genic upstream transcript variant, 5 prime UTR variant
rs140524886	G>A	Likely-benign, conflicting-interpretations-of-pathogenicity	Coding sequence variant, synonymous variant, genic downstream transcript variant
rs141503266	G>C	Likely-benign, conflicting-interpretations-of-pathogenicity	Coding sequence variant, upstream transcript variant, missense variant, genic upstream transcript variant, 5 prime UTR variant
rs142551229	A>G	Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance	Missense variant, coding sequence variant
rs144706057	T>A,C	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Missense variant, genic upstream transcript variant, coding sequence variant, 5 prime UTR variant
rs145310008	C>T	Benign, conflicting-interpretations-of-pathogenicity	Intron variant, genic downstream transcript variant
rs146077918	C>T	Likely-benign, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs148237075	C>T	Likely-benign, conflicting-interpretations-of-pathogenicity	Synonymous variant, genic downstream transcript variant, coding sequence variant
rs148545569	C>A,T	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Missense variant, genic upstream transcript variant, coding sequence variant, 5 prime UTR variant
rs148969222	G>A,T	Likely-pathogenic, conflicting-interpretations-of-pathogenicity	Splice donor variant, genic downstream transcript variant, intron variant
rs149754073	C>A,G,T	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs150421256	A>G	Likely-pathogenic	Genic downstream transcript variant, splice acceptor variant
rs181161119	C>T	Likely-benign, conflicting-interpretations-of-pathogenicity	Synonymous variant, genic downstream transcript variant, coding sequence variant
rs183176301	T>C,G	Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity	Genic downstream transcript variant, intron variant
rs184657475	G>A,T	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Missense variant, genic upstream transcript variant, coding sequence variant, 5 prime UTR variant
rs191789336	G>A	Uncertain-significance, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs199927688	C>A,G,T	Likely-benign, conflicting-interpretations-of-pathogenicity	Upstream transcript variant, genic upstream transcript variant, synonymous variant, coding sequence variant, 5 prime UTR variant
rs200389141	C>A,T	Pathogenic	Upstream transcript variant, genic upstream transcript variant, missense variant, coding sequence variant, stop gained
rs200850440	A>G,T	Likely-benign, conflicting-interpretations-of-pathogenicity	Coding sequence variant, genic downstream transcript variant, synonymous variant
rs201231857	A>G	Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance	Upstream transcript variant, genic upstream transcript variant, missense variant, coding sequence variant, initiator codon variant
rs201427280	A>G	Conflicting-interpretations-of-pathogenicity, uncertain-significance	Coding sequence variant, missense variant
rs367543012	->T	Pathogenic-likely-pathogenic, pathogenic	Coding sequence variant, frameshift variant
rs367543013	CT>-	Pathogenic-likely-pathogenic	Coding sequence variant, 5 prime UTR variant, genic upstream transcript variant, frameshift variant
rs367543014	C>-	Pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs367543019	->A	Pathogenic-likely-pathogenic	Coding sequence variant, frameshift variant
rs367543024	AG>-	Pathogenic	Coding sequence variant, frameshift variant
rs367543026	TT>-,T	Likely-pathogenic	Upstream transcript variant, genic upstream transcript variant, frameshift variant, coding sequence variant, stop gained, 5 prime UTR variant
rs367543028	C>T	Pathogenic	Coding sequence variant, stop gained
rs367543029	G>A,C	Likely-pathogenic, pathogenic-likely-pathogenic, pathogenic	Coding sequence variant, genic downstream transcript variant, missense variant
rs367543031	C>T	Pathogenic	Coding sequence variant, genic downstream transcript variant, stop gained
rs367543033	TT>-	Likely-pathogenic	Coding sequence variant, genic downstream transcript variant, intron variant, frameshift variant
rs367543035	CAA>-	Pathogenic	Upstream transcript variant, genic upstream transcript variant, inframe indel, coding sequence variant, stop gained, 5 prime UTR variant
rs367543036	G>T	Likely-pathogenic	Splice donor variant
rs367543043	A>-,AA	Pathogenic	Coding sequence variant, upstream transcript variant, genic upstream transcript variant, frameshift variant
rs372668612	G>A	Likely-benign, conflicting-interpretations-of-pathogenicity	Upstream transcript variant, genic upstream transcript variant, synonymous variant, coding sequence variant, 5 prime UTR variant
rs373525781	C>T	Pathogenic	Coding sequence variant, 5 prime UTR variant, stop gained
rs375632163	C>T	Likely-benign, conflicting-interpretations-of-pathogenicity	Coding sequence variant, 5 prime UTR variant, genic upstream transcript variant, synonymous variant
rs527291754	G>A	Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance	Coding sequence variant, genic downstream transcript variant, missense variant
rs576199850	A>G	Conflicting-interpretations-of-pathogenicity	Genic downstream transcript variant, coding sequence variant, missense variant
rs587778105	GAA>-	Conflicting-interpretations-of-pathogenicity, uncertain-significance, not-provided	Coding sequence variant, upstream transcript variant, genic upstream transcript variant, 5 prime UTR variant, inframe deletion
rs587779884	C>T	Pathogenic-likely-pathogenic, pathogenic	Stop gained, genic downstream transcript variant, coding sequence variant
rs587779886	T>-	Pathogenic, likely-pathogenic	Splice donor variant, genic downstream transcript variant
rs587779888	G>C	Uncertain-significance, likely-pathogenic	Genic downstream transcript variant, coding sequence variant, missense variant, intron variant
rs587783037	C>T	Pathogenic	Stop gained, genic downstream transcript variant, coding sequence variant, intron variant
rs730881428	T>G	Pathogenic	Stop gained, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs730881429	C>-	Pathogenic	Genic upstream transcript variant, frameshift variant, coding sequence variant, upstream transcript variant
rs745538883	A>T	Likely-pathogenic	Genic downstream transcript variant, splice acceptor variant
rs745807085	CA>-	Pathogenic-likely-pathogenic, pathogenic	Frameshift variant, coding sequence variant, upstream transcript variant, genic upstream transcript variant, 5 prime UTR variant
rs746195311	G>A,T	Pathogenic, uncertain-significance, likely-pathogenic	Stop gained, coding sequence variant, missense variant, upstream transcript variant, genic upstream transcript variant, 5 prime UTR variant
rs746244182	TA>-	Pathogenic-likely-pathogenic, pathogenic	Genic upstream transcript variant, frameshift variant, coding sequence variant, upstream transcript variant
rs747281324	A>G	Conflicting-interpretations-of-pathogenicity, likely-pathogenic	Coding sequence variant, missense variant
rs747341586	A>-,AA	Pathogenic	Frameshift variant, coding sequence variant
rs747498968	G>-	Pathogenic	Genic upstream transcript variant, frameshift variant, coding sequence variant, upstream transcript variant
rs750293380	G>A,C,T	Pathogenic-likely-pathogenic, pathogenic, likely-pathogenic	Splice donor variant, genic upstream transcript variant
rs750667270	ATC>-	Pathogenic	Inframe deletion, coding sequence variant
rs754203833	C>G	Pathogenic-likely-pathogenic, pathogenic	Stop gained, coding sequence variant, upstream transcript variant, genic upstream transcript variant, 5 prime UTR variant
rs762354041	C>T	Pathogenic	Genic downstream transcript variant, stop gained, coding sequence variant
rs762804291	AA>-	Pathogenic	Frameshift variant, coding sequence variant
rs764086459	G>-	Likely-pathogenic	Genic downstream transcript variant, frameshift variant, coding sequence variant
rs765061205	GTAAACTAG>-	Likely-pathogenic	5 prime UTR variant, intron variant, splice donor variant, genic upstream transcript variant, coding sequence variant
rs770311534	A>T	Pathogenic, likely-pathogenic	Intron variant, genic downstream transcript variant, stop gained, coding sequence variant
rs770751979	A>-	Pathogenic	Frameshift variant, coding sequence variant
rs772785079	->G	Pathogenic, likely-pathogenic	Frameshift variant, coding sequence variant
rs774368488	A>C	Conflicting-interpretations-of-pathogenicity	Intron variant, genic downstream transcript variant
rs774777021	AACA>-	Pathogenic	Upstream transcript variant, coding sequence variant, frameshift variant, 5 prime UTR variant, genic upstream transcript variant
rs780379121	G>-	Pathogenic, pathogenic-likely-pathogenic	Frameshift variant, coding sequence variant, genic downstream transcript variant
rs781221411	->T	Pathogenic	Upstream transcript variant, coding sequence variant, frameshift variant, 5 prime UTR variant, genic upstream transcript variant
rs786204471	->AAAT	Pathogenic, pathogenic-likely-pathogenic	Frameshift variant, coding sequence variant
rs786204524	AAAGA>-	Pathogenic, pathogenic-likely-pathogenic	Frameshift variant, 5 prime UTR variant, genic upstream transcript variant, coding sequence variant
rs797045115	->TATCA	Likely-pathogenic	Frameshift variant, coding sequence variant, genic downstream transcript variant
rs864622347	TA>-	Pathogenic	Frameshift variant, coding sequence variant, genic downstream transcript variant
rs865866188	G>A,T	Pathogenic, likely-pathogenic	Splice donor variant
rs886051551	->T	Pathogenic	Frameshift variant, coding sequence variant
rs886051553	A>C	Conflicting-interpretations-of-pathogenicity	Synonymous variant, coding sequence variant, genic downstream transcript variant
rs897262346	G>C,T	Likely-pathogenic	Genic upstream transcript variant, upstream transcript variant, splice acceptor variant
rs918752814	C>T	Pathogenic	5 prime UTR variant, upstream transcript variant, coding sequence variant, stop gained, genic upstream transcript variant
rs960430492	TT>-	Pathogenic	Genic upstream transcript variant, coding sequence variant, upstream transcript variant, frameshift variant, 5 prime UTR variant
rs1057516253	AT>-	Likely-pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1057516261	AGGAA>-	Uncertain-significance, likely-pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1057516297	->T	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, 5 prime UTR variant, upstream transcript variant, coding sequence variant
rs1057516361	TTAGCAGCCAGCAAAT>-	Likely-pathogenic	Upstream transcript variant, genic upstream transcript variant, coding sequence variant, frameshift variant
rs1057516452	CGTTACA>-	Likely-pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1057516547	A>-	Likely-pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1057516593	T>C	Likely-pathogenic	Genic upstream transcript variant, 5 prime UTR variant, initiator codon variant, missense variant
rs1057516700	C>T	Likely-pathogenic	Stop gained, coding sequence variant, genic downstream transcript variant
rs1057516719	G>-	Likely-pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1057516728	C>A,T	Likely-pathogenic	Stop gained, synonymous variant, coding sequence variant, genic downstream transcript variant
rs1057516774	G>A,T	Uncertain-significance, likely-pathogenic	Intron variant, stop gained, genic downstream transcript variant, missense variant, coding sequence variant
rs1057516956	GGAAGGTCGGCCAA>-	Likely-pathogenic	Upstream transcript variant, genic upstream transcript variant, coding sequence variant, frameshift variant
rs1057516964	G>A	Pathogenic-likely-pathogenic	Stop gained, genic upstream transcript variant, 5 prime UTR variant, upstream transcript variant, coding sequence variant
rs1057517030	TG>-	Pathogenic, likely-pathogenic	Stop gained, genic upstream transcript variant, 5 prime UTR variant, coding sequence variant, inframe indel
rs1057517154	->A	Likely-pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1057517229	CTGA>-	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, 5 prime UTR variant, upstream transcript variant, coding sequence variant
rs1057517266	AGCA>GGC	Likely-pathogenic	Upstream transcript variant, genic upstream transcript variant, coding sequence variant, frameshift variant
rs1057517359	->CTTA	Likely-pathogenic	Stop gained, genic upstream transcript variant, 5 prime UTR variant, coding sequence variant, inframe indel
rs1057517431	A>-	Likely-pathogenic	Upstream transcript variant, genic upstream transcript variant, coding sequence variant, frameshift variant
rs1057517432	C>-	Likely-pathogenic	Upstream transcript variant, genic upstream transcript variant, coding sequence variant, frameshift variant
rs1060500652	GTAAGTTAT>-	Likely-pathogenic	Splice donor variant, intron variant, coding sequence variant
rs1170049553	CA>-	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, 5 prime UTR variant, upstream transcript variant, coding sequence variant
rs1179486581	G>A	Likely-pathogenic	Splice donor variant, genic upstream transcript variant
rs1215497457	A>C	Likely-pathogenic	Initiator codon variant, genic upstream transcript variant, missense variant, 5 prime UTR variant
rs1217879599	T>-	Pathogenic	5 prime UTR variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant, frameshift variant
rs1231598990	G>A	Likely-pathogenic	Splice acceptor variant
rs1234064430	AA>-	Likely-pathogenic	Frameshift variant, coding sequence variant, genic downstream transcript variant, intron variant
rs1245531016	A>-	Likely-pathogenic	Frameshift variant, coding sequence variant, genic downstream transcript variant
rs1248548542	A>G	Likely-pathogenic, pathogenic	Splice acceptor variant
rs1275708646	A>-	Likely-pathogenic	Genic downstream transcript variant, frameshift variant, coding sequence variant
rs1309932713	ATGGGGA>-	Pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1319786857	T>-	Pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1356090839	G>A	Pathogenic	Genic upstream transcript variant, stop gained, upstream transcript variant, coding sequence variant
rs1400231534	T>A	Pathogenic	Coding sequence variant, stop gained
rs1477193473	G>A,T	Uncertain-significance, pathogenic	Stop gained, upstream transcript variant, coding sequence variant, missense variant, genic upstream transcript variant
rs1486692931	C>-	Pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1555418352	TT>-	Likely-pathogenic	Stop gained, upstream transcript variant, coding sequence variant, 5 prime UTR variant, genic upstream transcript variant
rs1555418380	C>-	Likely-pathogenic	Upstream transcript variant, coding sequence variant, frameshift variant, 5 prime UTR variant, genic upstream transcript variant
rs1555418701	C>-	Likely-pathogenic	Frameshift variant, 5 prime UTR variant, coding sequence variant, genic upstream transcript variant
rs1555419696	G>A	Likely-pathogenic	Splice acceptor variant, 5 prime UTR variant, intron variant, genic upstream transcript variant
rs1555419704	C>-	Likely-pathogenic	Coding sequence variant, frameshift variant, 5 prime UTR variant, intron variant, genic upstream transcript variant
rs1555419710	G>-	Pathogenic	Coding sequence variant, frameshift variant, initiator codon variant, intron variant, genic upstream transcript variant
rs1555419724	A>-	Likely-pathogenic	Intron variant, frameshift variant, coding sequence variant, genic upstream transcript variant
rs1555419742	C>-	Likely-pathogenic	Intron variant, frameshift variant, coding sequence variant, genic upstream transcript variant
rs1555419748	G>A	Likely-pathogenic	Splice donor variant, intron variant, genic upstream transcript variant
rs1555419779	A>C	Likely-pathogenic	Splice acceptor variant, genic upstream transcript variant, upstream transcript variant
rs1555419806	->C	Pathogenic	Upstream transcript variant, coding sequence variant, frameshift variant, 5 prime UTR variant, genic upstream transcript variant
rs1555419829	T>-	Likely-pathogenic	Upstream transcript variant, coding sequence variant, frameshift variant, initiator codon variant, genic upstream transcript variant
rs1555419862	->G	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs1555419873	ACAG>-	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs1555419889	T>-	Pathogenic	Frameshift variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs1555419902	->A	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs1555419961	T>-	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs1555419980	ACTG>-	Likely-pathogenic	Frameshift variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant
rs1555420142	A>G	Likely-pathogenic	Splice acceptor variant
rs1555420602	AT>-	Pathogenic, pathogenic-likely-pathogenic	Coding sequence variant, frameshift variant
rs1555420842	->GA	Pathogenic-likely-pathogenic	Coding sequence variant, frameshift variant
rs1555420844	->CT	Likely-pathogenic	Coding sequence variant, frameshift variant
rs1555420871	G>A	Likely-pathogenic	Splice acceptor variant
rs1555420917	G>T	Likely-pathogenic	Splice donor variant
rs1555423062	G>C	Likely-pathogenic	Splice acceptor variant, genic downstream transcript variant
rs1555423119	AT>-	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1555423753	AA>-	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1555424298	C>-	Likely-pathogenic	Intron variant, stop gained, coding sequence variant, genic downstream transcript variant
rs1555424305	G>-	Likely-pathogenic, pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1555424311	T>-	Likely-pathogenic, pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1555424368	G>A	Likely-pathogenic	Splice acceptor variant, intron variant, genic downstream transcript variant
rs1555424372	TT>-	Likely-pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1555424376	A>-	Pathogenic-likely-pathogenic	Intron variant, coding sequence variant, genic downstream transcript variant, frameshift variant
rs1555424890	T>C	Likely-pathogenic	Splice donor variant, genic downstream transcript variant
rs1555425062	C>-	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1555425063	C>-	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1555425074	G>T	Likely-pathogenic	Genic downstream transcript variant, stop gained, coding sequence variant
rs1555425080	T>-	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, frameshift variant
rs1567035745	GATGTGATTTGCAT>-	Pathogenic	5 prime UTR variant, genic upstream transcript variant, coding sequence variant, frameshift variant, upstream transcript variant
rs1567036566	G>T	Pathogenic	Coding sequence variant, stop gained, 5 prime UTR variant, genic upstream transcript variant
rs1567036579	TACATTCAACTGAGAAAGTTCCATGTATTGAATTTGATGATGATGATTAT>-	Pathogenic	Coding sequence variant, stop gained, 5 prime UTR variant, genic upstream transcript variant
rs1567038003	->T	Pathogenic	Coding sequence variant, frameshift variant, 5 prime UTR variant, genic upstream transcript variant
rs1567040469	A>T	Likely-pathogenic	5 prime UTR variant, genic upstream transcript variant, stop gained, intron variant, coding sequence variant
rs1567045130	->TT	Pathogenic	Coding sequence variant, frameshift variant
rs1567045531	A>-	Pathogenic	Coding sequence variant, frameshift variant
rs1567052178	GA>-	Likely-pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1567052324	T>C	Likely-pathogenic	Genic downstream transcript variant, splice donor variant
rs1567053170	A>G	Likely-pathogenic	Splice acceptor variant, genic downstream transcript variant
rs1567063125	T>AA	Pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant, intron variant
rs1567066891	->C	Pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1596218981	G>-	Pathogenic	5 prime UTR variant, genic upstream transcript variant, coding sequence variant, frameshift variant, upstream transcript variant
rs1596221020	G>T	Pathogenic	Coding sequence variant, stop gained, 5 prime UTR variant, genic upstream transcript variant
rs1596223715	G>A	Likely-pathogenic	Splice acceptor variant, genic upstream transcript variant
rs1596228957	->GAAACTTT	Pathogenic	Coding sequence variant, intron variant, stop gained, genic upstream transcript variant
rs1596229894	->T	Pathogenic	Coding sequence variant, upstream transcript variant, frameshift variant, genic upstream transcript variant
rs1596230118	G>T	Pathogenic	Coding sequence variant, upstream transcript variant, stop gained, genic upstream transcript variant
rs1596232266	A>T	Pathogenic	Coding sequence variant, stop gained
rs1596235791	TCTGAC>GATATGT	Pathogenic	Coding sequence variant, inframe indel, stop gained
rs1596250255	A>G	Likely-pathogenic	Splice acceptor variant, genic downstream transcript variant
rs1596250472	AA>-	Pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1596252279	C>T	Pathogenic	Coding sequence variant, genic downstream transcript variant, stop gained
rs1596259860	CACT>-	Pathogenic	Coding sequence variant, genic downstream transcript variant, frameshift variant
rs1596267627	C>T	Pathogenic	Coding sequence variant, genic downstream transcript variant, stop gained, intron variant
rs1596268270	A>T	Pathogenic	Coding sequence variant, genic downstream transcript variant, stop gained, intron variant

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT016590	hsa-miR-193b-3p	Microarray	20304954
MIRT024921	hsa-miR-215-5p	Microarray	19074876
MIRT026815	hsa-miR-192-5p	Microarray	19074876
MIRT2181666	hsa-miR-105	CLIP-seq
MIRT2181667	hsa-miR-3671	CLIP-seq
MIRT2181668	hsa-miR-522	CLIP-seq
MIRT2181669	hsa-miR-548ac	CLIP-seq
MIRT2181670	hsa-miR-548ae	CLIP-seq
MIRT2181671	hsa-miR-548aj	CLIP-seq
MIRT2181672	hsa-miR-548am	CLIP-seq
MIRT2181673	hsa-miR-548d-3p	CLIP-seq
MIRT2181674	hsa-miR-548x	CLIP-seq
MIRT2181675	hsa-miR-548z	CLIP-seq
MIRT2181676	hsa-miR-607	CLIP-seq
MIRT2485245	hsa-miR-338-3p	CLIP-seq
MIRT2485246	hsa-miR-361-3p	CLIP-seq
MIRT2485247	hsa-miR-4310	CLIP-seq
MIRT2485248	hsa-miR-4729	CLIP-seq
MIRT2485245	hsa-miR-338-3p	CLIP-seq
MIRT2485246	hsa-miR-361-3p	CLIP-seq
MIRT2485247	hsa-miR-4310	CLIP-seq
MIRT2485248	hsa-miR-4729	CLIP-seq

Transcription factors

Transcription factor	Regulation	Reference
ESR1	Activation	17268063

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000079	Process	Regulation of cyclin-dependent protein serine/threonine kinase activity	IMP	15604258
GO:0000166	Function	Nucleotide binding	IEA
GO:0000228	Component	Nuclear chromosome	IDA	23509288
GO:0000400	Function	Four-way junction DNA binding	IDA	11735402, 20639533, 25901030
GO:0000403	Function	Y-form DNA binding	IDA	11735402
GO:0000405	Function	Bubble DNA binding	IDA	11433031, 11735402
GO:0000723	Process	Telomere maintenance	IBA
GO:0000723	Process	Telomere maintenance	IDA	11735402
GO:0000723	Process	Telomere maintenance	IEA
GO:0000724	Process	Double-strand break repair via homologous recombination	IBA
GO:0000724	Process	Double-strand break repair via homologous recombination	IDA	23543748
GO:0000724	Process	Double-strand break repair via homologous recombination	IEA
GO:0000724	Process	Double-strand break repair via homologous recombination	NAS	11309417
GO:0000729	Process	DNA double-strand break processing	IDA	21325134
GO:0000781	Component	Chromosome, telomeric region	IDA	10779560
GO:0000800	Component	Lateral element	IDA	10728666
GO:0002039	Function	P53 binding	IPI	11781842
GO:0003676	Function	Nucleic acid binding	IEA
GO:0003677	Function	DNA binding	IDA	24816114
GO:0003677	Function	DNA binding	IEA
GO:0003678	Function	DNA helicase activity	IDA	9388193, 12181313, 12818200, 17878217, 19734539, 24816114, 25901030
GO:0003678	Function	DNA helicase activity	IMP	21325134
GO:0003697	Function	Single-stranded DNA binding	IDA	12818200, 20639533
GO:0004386	Function	Helicase activity	IDA	10871376
GO:0004386	Function	Helicase activity	IEA
GO:0005515	Function	Protein binding	IPI	10728666, 10825162, 11309417, 11919194, 12181313, 12975363, 14688284, 15229185, 15775963, 15965237, 16030011, 16864798, 17961633, 20360068, 20711169, 20826342, 21240188, 21325134, 23509288, 23708797, 24126761, 26496610, 28506294, 35271311
GO:0005524	Function	ATP binding	IDA	24816114, 25901030
GO:0005524	Function	ATP binding	IEA
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	9388480, 11500040, 31772289
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	NAS	23543748
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005657	Component	Replication fork	ISS
GO:0005694	Component	Chromosome	IBA
GO:0005730	Component	Nucleolus	IDA	10779560
GO:0005737	Component	Cytoplasm	IBA
GO:0005829	Component	Cytosol	IDA
GO:0006260	Process	DNA replication	IBA
GO:0006260	Process	DNA replication	IEA
GO:0006260	Process	DNA replication	ISS
GO:0006281	Process	DNA repair	IEA
GO:0006281	Process	DNA repair	NAS	7585968
GO:0006310	Process	DNA recombination	IEA
GO:0006310	Process	DNA recombination	NAS	7585968, 10728666
GO:0006974	Process	DNA damage response	IDA	23509288
GO:0006974	Process	DNA damage response	IEA
GO:0006974	Process	DNA damage response	IMP	12818200
GO:0007095	Process	Mitotic G2 DNA damage checkpoint signaling	IDA	11309417
GO:0008094	Function	ATP-dependent activity, acting on DNA	IDA	10359700, 24816114, 25901030
GO:0008270	Function	Zinc ion binding	IDA	24816114, 25901030
GO:0009378	Function	Four-way junction helicase activity	IBA
GO:0009378	Function	Four-way junction helicase activity	IDA	11433031, 11735402, 12818200, 25901030
GO:0010165	Process	Response to X-ray	IDA	11309417
GO:0016363	Component	Nuclear matrix	IDA	11309417
GO:0016605	Component	PML body	IDA	10779560
GO:0016605	Component	PML body	IDA	10728666
GO:0016787	Function	Hydrolase activity	IEA
GO:0016818	Function	Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA
GO:0016853	Function	Isomerase activity	IEA
GO:0016887	Function	ATP hydrolysis activity	IEA
GO:0031297	Process	Replication fork processing	IDA	17115688
GO:0031297	Process	Replication fork processing	IEA
GO:0031422	Component	RecQ family helicase-topoisomerase III complex	IPI	24984776
GO:0032201	Process	Telomere maintenance via semi-conservative replication	TAS
GO:0032392	Process	DNA geometric change	IDA	11735402
GO:0032392	Process	DNA geometric change	IEA
GO:0032392	Process	DNA geometric change	ISS
GO:0032991	Component	Protein-containing complex	IDA	10359700
GO:0042802	Function	Identical protein binding	IDA	10359700
GO:0042803	Function	Protein homodimerization activity	IDA	28228481
GO:0043138	Function	3'-5' DNA helicase activity	IBA
GO:0043138	Function	3'-5' DNA helicase activity	IDA	9388193
GO:0043138	Function	3'-5' DNA helicase activity	IEA
GO:0043138	Function	3'-5' DNA helicase activity	TAS
GO:0045893	Process	Positive regulation of DNA-templated transcription	IDA	11781842
GO:0045910	Process	Negative regulation of DNA recombination	IEA
GO:0045910	Process	Negative regulation of DNA recombination	IMP	9671747
GO:0046872	Function	Metal ion binding	IEA
GO:0051259	Process	Protein complex oligomerization	IDA	28228481
GO:0051260	Process	Protein homooligomerization	IDA	28228481
GO:0051782	Process	Negative regulation of cell division	IMP	11781842
GO:0051880	Function	G-quadruplex DNA binding	IDA	11433031, 11735402
GO:0061749	Function	Forked DNA-dependent helicase activity	IDA	11735402, 25901030
GO:0061820	Process	Telomeric D-loop disassembly	IDA	16030011, 19734539
GO:0061821	Function	Telomeric D-loop binding	IDA	19734539
GO:0061849	Function	Telomeric G-quadruplex DNA binding	IDA	19734539
GO:0071139	Process	Resolution of DNA recombination intermediates	IDA	23543748
GO:0071479	Process	Cellular response to ionizing radiation	IDA	23509288
GO:0072711	Process	Cellular response to hydroxyurea	IDA	23509288
GO:0072757	Process	Cellular response to camptothecin	IDA	23509288
GO:0090656	Process	T-circle formation	TAS	27918544
GO:1905773	Function	8-hydroxy-2'-deoxyguanosine DNA binding	IDA	19734539
GO:1990814	Function	DNA/DNA annealing activity	IDA	17878217

Other IDs

• MIM: 604610
• HGNC: 1058
• e!Ensembl: ENSG00000197299

Protein

• UniProt ID: P54132
• Protein name: RecQ-like DNA helicase BLM (EC 5.6.2.4) (Bloom syndrome protein) (DNA 3'-5' helicase BLM) (DNA helicase, RecQ-like type 2) (RecQ2) (RecQ protein-like 3)
• Protein function: ATP-dependent DNA helicase that unwinds double-stranded (ds)DNA in a 3'-5' direction (PubMed:24816114, PubMed:25901030, PubMed:9388193, PubMed:9765292). Participates in DNA replication and repair (PubMed:12019152, PubMed:21325134, PubMed:2350928
• PDB: 2KV2, 2MH9, 2RRD, 3WE2, 3WE3, 4CDG, 4CGZ, 4O3M, 5LUP, 5MK5, 5U6K, 7AUC, 7AUD, 7XUW, 7XV0
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF16202	BLM_N	1 → 367	N-terminal region of Bloom syndrome protein	Family
  PF08072	BDHCT	372 → 411	BDHCT (NUC031) domain	Domain
  PF16204	BDHCT_assoc	425 → 647	BDHCT-box associated domain on Bloom syndrome protein	Family
  PF00270	DEAD	669 → 841	DEAD/DEAH box helicase	Domain
  PF00271	Helicase_C	874 → 984	Helicase conserved C-terminal domain	Family
  PF16124	RecQ_Zn_bind	995 → 1067	RecQ zinc-binding	Domain
  PF09382	RQC	1071 → 1198	RQC domain	Domain
  PF00570	HRDC	1215 → 1282	HRDC domain	Domain

• Sequence:

  MAAVPQNNLQEQLERHSARTLNNKLSLSKPKFSGFTFKKKTSSDNNVSVTNVSVAKTPVL
  RNKDVNVTEDFSFSEPLPNTTNQQRVKDFFKNAPAGQETQRGGSKSLLPDFLQTPKEVVC
  TTQNTPTVKKSRDTALKKLEFSSSPDSLSTINDWDDMDDFDTSETSKSFVTPPQSHFVRV
  STAQKSKKGKRNFFKAQLYTTNTVKTDLPPPSSESEQIDLTEEQKDDSEWLSSDVICIDD
  GPIAEVHINEDAQESDSLKTHLEDERDNSEKKKNLEEAELHSTEKVPCIEFDDDDYDTDF
  VPPSPEEIISASSSSSKCLSTLKDLDTSDRKEDVLSTSKDLLSKPEKMSMQELNPETSTD
  CDARQISLQQQLIHVMEHICKLIDTIPDDKLKLLDCGNELLQQRNIRRKLLTEVDFNKSD
  ASLLGSLWRYRPDSLDGPMEGDSCPTGNSMKELNFSHLPSNSVSPGDCLLTTTLGKTGFS
  ATRKNLFERPLFNTHLQKSFVSSNWAETPRLGKKNESSYFPGNVLTSTAVKDQNKHTASI
  NDLERETQPSYDIDNFDIDDFDDDDDWEDIMHNLAASKSSTAAYQPIKEGRPIKSVSERL
  SSAKTDCLPVSSTAQNINFSESIQNYTDKSAQNLASRNLKHERFQSLSFPHTKEMMKIFH
  KKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLI
  VDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTL
  ENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKD
  ILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRE
  CDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF
  VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHF
  NNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDD
  VKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH
  NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKK
  QKALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVL
  LQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP
  VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSS
  SASHTSQATSGANSKLGIMAPPKPINRPFLKPSYAFS

• Sequence length: 1417

Pathways

KEGG:

Homologous recombination
Fanconi anemia pathway

Reactome:

Processive synthesis on the C-strand of the telomere
SUMOylation of DNA damage response and repair proteins
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint

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Associated diseases

Causal
Disease merge term	Disease name	dbSNP ID	References
Bloom Syndrome	bloom syndrome	rs148969222, rs747341586, rs367543036, rs1555423753, rs1555419710, rs1555419829, rs1057517266, rs1596250255, rs1567063125, rs587779886, rs1596218981, rs746218707, rs1555424305, rs1057517154, rs1895641581, rs886051551, rs918752814, rs367543028, rs1555424311, rs1555419806, rs1555419862, rs1057517432, rs1897239414, rs367543018, rs1567066891, rs587783037, rs1217879599, rs1555425080, rs1555424372, rs1057516728, rs750293380, rs1567035745, rs367543016, rs1234064430, rs1319786857, rs1555420142, rs1057516956, rs1895612617, rs367543021, rs1477193473, rs730881428, rs1596230118, rs1215497457, rs1555424376, rs367543043, rs745807085, rs1596221020, rs367543024, rs1275708646, rs1555419889, rs1555420602, rs1057517431, rs1895692863, rs367543031, rs1567045130, rs367543026, rs1596235791, rs1555418380, rs1555425063, rs1555420842, rs1057516297, rs1596228957, rs367543039, rs1555425062, rs772785079, rs1555420844, rs1057516452, rs1205301894, rs1567052324, rs786204524, rs1596267627, rs1170049553, rs897262346, rs762354041, rs1057517229, rs1596229894, rs367543014, rs764086459, rs770751979, rs1567038003, rs1245531016, rs1057516700, rs367543013, rs747281324, rs1596223715, rs1555419696, rs1555418352, rs781221411, rs1057517359, rs747498968, rs367543030, rs770311534, rs1555424368, rs1400231534, rs1555425074, rs745538883, rs1896235438, rs367543012, rs786204471, rs1596250472, rs1555419748, rs113993962, rs1555419873, rs1060500652, rs1057517030, rs1356090839, rs367543029, rs1567036566, rs1555418701, rs1567052178, rs1179486581, rs1057516719, rs1896237929, rs367543019, rs780379121, rs1596252279, rs754203833, rs367543035, rs1555419980, rs1248548542, rs1555419704, rs1057516964, rs138943954, rs367543032, rs1567036579, rs1567053170, rs1555419961, rs1057516253, rs1896712163, rs200389141, rs797045115, rs865866188, rs137853153, rs762804291, rs373525781, rs1555419724, rs746244182, rs1486692931, rs367543017, rs1309932713, rs1567040469, rs1555420871, rs1555419902, rs1057516774, rs1896974524, rs864622347, rs1596232266, rs1555423062, rs960430492, rs1555419742, rs1057516361, rs1231598990, rs367543033, rs1567045531, rs774777021, rs1555423119, rs1555420917, rs1057516547, rs1286600850, rs587779884	N/A
colorectal cancer	Colorectal cancer	rs200389141	N/A

Unknown
Disease merge term	Disease name	Evidence	References	Source
Breast Cancer	breast cancer	N/A	N/A	GenCC
hereditary cancer	Hereditary cancer	N/A	N/A	ClinVar
Insomnia	Insomnia	N/A	N/A	GWAS
Microcephaly	microcephaly	N/A	N/A	ClinVar
ovarian cancer	Ovarian cancer	N/A	N/A	ClinVar

Associations from Text Mining
Disease Name	Relationship Type	References
Adenocarcinoma of Lung	Associate	32221746
Adenomatous Polyposis Coli	Associate	39519399
Aging Premature	Inhibit	10620009
Aging Premature	Associate	20451470, 26455304, 8913739
Alternating hemiplegia of childhood	Associate	24413054, 28398700, 28877996, 31138797, 31171703
Anemia Hemolytic	Associate	15257300
Aneuploidy	Associate	40355560
Ataxia Telangiectasia	Associate	11309417, 12034743
Autosomal Recessive Primary Microcephaly	Associate	28464862
Bloom Syndrome	Associate	10359700, 10521302, 10540192, 10620009, 10734115, 10779560, 10823897, 10825162, 10965492, 11154689, 11309417, 11325959, 11399766, 11433031, 11461087, 11470874, 11472631, 11691925, 11741924, 11876000, 11919194, 12034743, 12060858, 12433984, 12724401, 12826610, 12975363, 14517203, 14576316, 14577841, 14688284, 14729972, 15257300, 15579905, 15899892, 15990871, 16030011, 16287861, 16288211, 16412221, 16537486, 16595695, 16611240, 16950766, 17599064, 17634426, 17878217, 17984114, 18003860, 18210922, 18504617, 18923071, 19165145, 19432957, 19567405, 19632996, 19935873, 19966276, 20663905, 20826341, 20826342, 21113733, 21300576, 21399624, 21712816, 21736299, 22024395, 22392978, 22576367, 23028338, 23110454, 23129629, 23161009, 23261817, 23509288, 24012121, 24095737, 24108125, 24958861, 25418155, 25766002, 25794620, 26181065, 26358404, 26556339, 27083049, 27601585, 27977684, 28947735, 29098565, 29523790, 30936263, 31112269, 31544923, 31816118, 32073752, 32221746, 32367056, 32704157, 33219493, 33495511, 33500419, 33832920, 34177791, 34352413, 34370039, 35080989, 35099000, 35115399, 35119917, 36004459, 36569948, 37052241, 37988849, 38266639, 40355560, 7485150, 7585968, 8022833, 8079989, 8913739, 9671747, 9765292, 9837821
Breast Neoplasms	Associate	19432957, 23028338, 23404160, 33735170, 36315097, 37047678
Carcinogenesis	Inhibit	10823897
Carcinogenesis	Associate	25424877, 29386092, 31210839, 38124443
Carcinoma Hepatocellular	Associate	33540684
Carcinoma Non Small Cell Lung	Associate	32342665
Cardiomyopathies	Associate	32631246
Chromosomal Instability	Associate	19567405
Chromosome Aberrations	Associate	10620009, 11472631, 31544923
Chromosome Breakage	Associate	38266639
Chromosome Disorders	Inhibit	26556339
Chromosome Disorders	Associate	31816118
Colorectal Neoplasms	Associate	15959913, 18210922, 25668003, 26318585, 26358404, 28647934, 29386092
Cutis Laxa Autosomal Recessive Type IIB	Associate	27859906
Diabetes Mellitus	Associate	34177791
Disease	Associate	11470874
DNA Virus Infections	Associate	16287861
Endometrial Neoplasms	Associate	28647934
Fanconi Anemia	Associate	22024395, 23028338, 27083049
Fibrosarcoma	Associate	33219493
Genetic Diseases Inborn	Associate	19917125, 23028338, 24012121, 25424877, 26455304
Growth Disorders	Associate	25418155, 31816118
Harlequin type ichthyosis	Associate	39285403
Hereditary Breast and Ovarian Cancer Syndrome	Associate	18210922, 29452344, 37047678
HIV Infections	Associate	15498034
Immune System Diseases	Associate	35687490
Immunologic Deficiency Syndromes	Associate	15498034, 30936263
Infections	Stimulate	15498034
Infertility	Associate	18923075
Inflammation	Associate	30936263
Leukemia Myeloid Acute	Associate	19432957, 32868804
Leukemia Promyelocytic Acute	Associate	10779560
Li Fraumeni Syndrome	Associate	11399766
Lymphoma	Associate	19917125, 35687490
Lymphoma Non Hodgkin	Associate	19917125, 20813000
Mammary Neoplasms Animal	Associate	17268063
Melanoma	Associate	26225426, 38247872, 39285403
Microsatellite Instability	Associate	17634426
Multiple Myeloma	Associate	36223594, 36569948
Myopathy with Giant Abnormal Mitochondria	Associate	33495511
Neoplasm Metastasis	Associate	36499126
Neoplasms	Associate	10779560, 11470874, 15498034, 16412221, 16595695, 17634426, 17984114, 18210922, 18504617, 18923075, 19432957, 19632996, 20451470, 20826342, 23110454, 23129629, 23161009, 23404160, 23650516, 24012121, 24108125, 25418155, 25766002, 26318585, 26455304, 27083049, 27601585, 27764811, 27859906, 28090586, 28302160, 28647934, 29042409, 29523790, 30936263, 31210839, 31544923, 31660888, 31816118, 31937788, 32342665, 32704157, 33004031, 33219493, 33647232, 33926553, 34879271, 36004459, 36716415, 37047678, 37052241, 37460928, 37885353, 37988849, 38124443, 38266639, 38593805, 40007132, 40340749, 40355560, 8913739
Neoplasms	Inhibit	10783165, 15364958, 25794620, 33495511, 34370039, 35236797
Neoplasms	Stimulate	11461087
Neuroblastoma	Associate	25477524
Osteosarcoma	Associate	35057767
Ovarian Neoplasms	Associate	29452344, 37047678
Pancreatic Neoplasms	Associate	39256447
Periodontitis	Associate	36389665
Precancerous Conditions	Associate	17634426
Prostatic Neoplasms	Associate	25111073, 25472581, 31210839, 31816118, 36499126
Rhabdomyosarcoma	Associate	33832920
Rothmund Thomson Syndrome	Associate	10734115, 16809776, 27859906
Sleep Deprivation	Associate	33495511
Stomach Neoplasms	Associate	32704157
Telomeric 22q13 Monosomy Syndrome	Associate	22576367, 25084169, 28877996
Triple Negative Breast Neoplasms	Associate	29452344
Urinary Bladder Neoplasms	Associate	31828101
Urinary Bladder Neoplasms	Stimulate	36004459
Werner Syndrome	Associate	10779560, 10823897, 15899892, 16030011, 20663905, 22576367, 23161009, 32367056, 8913739, 9671747
Williams Syndrome	Associate	16288211, 19966276
Wilms Tumor	Associate	40340749