Gene Gene information from NCBI Gene database.
Entrez ID 6305
Gene name SET binding factor 1
Gene symbol SBF1
Synonyms (NCBI Gene)
CMT4B3DENND7AMTMR5
Chromosome 22
Chromosome location 22q13.33
Summary This gene encodes a member of the protein-tyrosine phosphatase family. However, the encoded protein does not appear to be a catalytically active phosphatase because it lacks several amino acids in the catalytic pocket. This protein contains a Guanine nucl
SNPs SNP information provided by dbSNP.
16
SNP ID Visualize variation Clinical significance Consequence
rs182956712 C>G Conflicting-interpretations-of-pathogenicity Intron variant
rs200488568 T>C Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs201399007 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs201985055 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs202049257 G>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
204
miRTarBase ID miRNA Experiments Reference
MIRT051209 hsa-miR-16-5p CLASH 23622248
MIRT048226 hsa-miR-196a-5p CLASH 23622248
MIRT046284 hsa-miR-23b-3p CLASH 23622248
MIRT045439 hsa-miR-149-5p CLASH 23622248
MIRT044578 hsa-miR-320a CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0005085 Function Guanyl-nucleotide exchange factor activity IBA
GO:0005085 Function Guanyl-nucleotide exchange factor activity IDA 20937701
GO:0005085 Function Guanyl-nucleotide exchange factor activity IEA
GO:0005085 Function Guanyl-nucleotide exchange factor activity TAS
GO:0005737 Component Cytoplasm IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603560 10542 ENSG00000100241
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95248
Protein name Myotubularin-related protein 5 (Inactive phosphatidylinositol 3-phosphatase 5) (SET-binding factor 1) (Sbf1)
Protein function Acts as an adapter for the phosphatase MTMR2 to regulate MTMR2 catalytic activity and subcellular location (PubMed:12668758). Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form (PubMe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03456 uDENN 25 85 uDENN domain Domain
PF02141 DENN 129 311 DENN (AEX-3) domain Family
PF12335 SBF2 543 765 Myotubularin protein Family
PF02893 GRAM 879 1018 GRAM domain Domain
PF06602 Myotub-related 1108 1533 Myotubularin-like phosphatase domain Domain
PF00169 PH 1763 1866 PH domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in neurons within the frontal cortex, in neurons of the deep cerebellar nuclei, stellate and basket cells of the molecular layer, and Golgi cells of the granular layer (at protein level). {ECO:0000269|PubMed:35580604}.
Sequence
MARLADYFVLVAFGPHPRGSGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPER
NPPTFFVAVLTDINSERHYCACLTF
WEPAEPSQQETTRVEDATEREEEGDEGGQTHLSPT
APAPSAQLFAPKTLVLVSRLDHTEVFRNSLGLIYAIHVEGLNVCLENVIGNLLTCTVPLA
GGSQRTISLGAGDRQVIQTPLADSLPVSRCSVALLFRQLGITNVLSLFCAALTEHKVLFL
SRSYQRLADACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAETQEL
LDVIVADLDGG
TVTIPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTTSTSS
LKMQDKELRAVFLRLFAQLLQGYRWCLHVVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKV
LEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVQELAEQLYKNEN
PYPAVAMHKVQRPGESSHLRRVPRPFPRLDEGTVQWIVDQAAAKMQGAPPAVKAERRTTV
PSGPPMTAILERCSGLHVNSARRLEVVRNCISYVFEGKMLEAKKLLPAVLRALKGRAARR
CLAQELHLHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLS
PGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPTEDLAPAQEVGEAPSQED
ERSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRM
SYLLLPLDSSKSRLL
RERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCT
ESGVTSDHLKGLHVMVPDIVQMHIETLEAVQRESRRLPPIQKPKLLRPRLLPGEECVLDG
LRVYLLPDGREEGAGGSAGGPALLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVA
ALTKEKRISVQTPVDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSAELFRKQLHKLRYP
PD
IRATFAFTLGSAHTPGRPPRVTKDKGPSLRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWE
HRGQPPPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLS
SSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRS
GRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADAS
GRNTLSGFSSAHMGSHGKWGSVRTSGRSSGLGTDVGSRLAGRDALAPPQANGGPPDPGFL
RPQRAALYILGDKAQLKGVRSDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPAAEP
SPASFLRSLEDSEWLIQIHKLLQVSVLVVELLDSGSSVLVGLEDGWDITTQVVSLVQLLS
DPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVHQVHLQFPM
EFEFSQFYLKFLGYHHVSRRFRTFLLDSDYERI
ELGLLYEEKGERRGQVPCRSVWEYVDR
LSKRTPVFHNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPE
EERSDGGAPQSRRRVVWPCYDSCPRAQPDAISRLLEELQRLETELGQPAERWKDTWDRVK
AAQRLEGRPDGRGTPSSLLVSTAPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTTSGS
RQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRV
DTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDR
IQSCLS
DA
Sequence length 1868
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Synthesis of PIPs at the ER membrane
RAB GEFs exchange GTP for GDP on RABs
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
251
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autism spectrum disorder Likely pathogenic rs1569513495 RCV000754681
Charcot-Marie-Tooth disease Likely pathogenic rs144773853 RCV004798921
Charcot-Marie-Tooth disease type 4 Likely pathogenic; Pathogenic rs1569512576 RCV000781831
Charcot-Marie-Tooth disease type 4B3 Likely pathogenic; Pathogenic rs1556436855, rs200624784, rs2148590692, rs144773853, rs2521930871, rs2521943497, rs587776986, rs1009209509 RCV001332200
RCV001449576
RCV001449644
RCV001733595
RCV002471622
RCV002471659
RCV000043693
RCV000995635
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs185841122 RCV005917556
Charcot-Marie-Tooth disease X-linked dominant 1 Conflicting classifications of pathogenicity rs201399007 RCV003128421
Cholangiocarcinoma Benign rs540628178 RCV005926271
Familial cancer of breast Likely benign rs185841122 RCV005917555
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Bovine Respiratory Disease Complex Associate 32444983
Charcot Marie Tooth Disease Associate 34169998
Charcot Marie Tooth disease Type 4E Associate 32444983
Demyelinating Diseases Associate 12687498
Dyskinesia Familial with Facial Myokymia Associate 36272304
Glaucoma Associate 12687498
Intellectual Disability Associate 34118926
Leukemia Myelogenous Chronic BCR ABL Positive Inhibit 36086954
Leukemia Myelogenous Chronic BCR ABL Positive Associate 36086954, 37774059
Mitochondrial Diseases Associate 34118926