Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6305
Gene name Gene Name - the full gene name approved by the HGNC.
SET binding factor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SBF1
Synonyms (NCBI Gene) Gene synonyms aliases
CMT4B3, DENND7A, MTMR5
Chromosome Chromosome number
22
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
22q13.33
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the protein-tyrosine phosphatase family. However, the encoded protein does not appear to be a catalytically active phosphatase because it lacks several amino acids in the catalytic pocket. This protein contains a Guanine nucl
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs182956712 C>G Conflicting-interpretations-of-pathogenicity Intron variant
rs200488568 T>C Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs201399007 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs201985055 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs202049257 G>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT051209 hsa-miR-16-5p CLASH 23622248
MIRT048226 hsa-miR-196a-5p CLASH 23622248
MIRT046284 hsa-miR-23b-3p CLASH 23622248
MIRT045439 hsa-miR-149-5p CLASH 23622248
MIRT044578 hsa-miR-320a CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005085 Function Guanyl-nucleotide exchange factor activity IBA
GO:0005085 Function Guanyl-nucleotide exchange factor activity IDA 20937701
GO:0005085 Function Guanyl-nucleotide exchange factor activity IEA
GO:0005085 Function Guanyl-nucleotide exchange factor activity TAS
GO:0005737 Component Cytoplasm IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603560 10542 ENSG00000100241
Protein
UniProt ID O95248
Protein name Myotubularin-related protein 5 (Inactive phosphatidylinositol 3-phosphatase 5) (SET-binding factor 1) (Sbf1)
Protein function Acts as an adapter for the phosphatase MTMR2 to regulate MTMR2 catalytic activity and subcellular location (PubMed:12668758). Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form (PubMe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03456 uDENN 25 85 uDENN domain Domain
PF02141 DENN 129 311 DENN (AEX-3) domain Family
PF12335 SBF2 543 765 Myotubularin protein Family
PF02893 GRAM 879 1018 GRAM domain Domain
PF06602 Myotub-related 1108 1533 Myotubularin-like phosphatase domain Domain
PF00169 PH 1763 1866 PH domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in neurons within the frontal cortex, in neurons of the deep cerebellar nuclei, stellate and basket cells of the molecular layer, and Golgi cells of the granular layer (at protein level). {ECO:0000269|PubMed:35580604}.
Sequence
MARLADYFVLVAFGPHPRGSGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPER
NPPTFFVAVLTDINSERHYCACLTF
WEPAEPSQQETTRVEDATEREEEGDEGGQTHLSPT
APAPSAQLFAPKTLVLVSRLDHTEVFRNSLGLIYAIHVEGLNVCLENVIGNLLTCTVPLA
GGSQRTISLGAGDRQVIQTPLADSLPVSRCSVALLFRQLGITNVLSLFCAALTEHKVLFL
SRSYQRLADACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAETQEL
LDVIVADLDGG
TVTIPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTTSTSS
LKMQDKELRAVFLRLFAQLLQGYRWCLHVVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKV
LEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVQELAEQLYKNEN
PYPAVAMHKVQRPGESSHLRRVPRPFPRLDEGTVQWIVDQAAAKMQGAPPAVKAERRTTV
PSGPPMTAILERCSGLHVNSARRLEVVRNCISYVFEGKMLEAKKLLPAVLRALKGRAARR
CLAQELHLHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLS
PGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPTEDLAPAQEVGEAPSQED
ERSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRM
SYLLLPLDSSKSRLL
RERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCT
ESGVTSDHLKGLHVMVPDIVQMHIETLEAVQRESRRLPPIQKPKLLRPRLLPGEECVLDG
LRVYLLPDGREEGAGGSAGGPALLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVA
ALTKEKRISVQTPVDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSAELFRKQLHKLRYP
PD
IRATFAFTLGSAHTPGRPPRVTKDKGPSLRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWE
HRGQPPPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLS
SSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRS
GRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADAS
GRNTLSGFSSAHMGSHGKWGSVRTSGRSSGLGTDVGSRLAGRDALAPPQANGGPPDPGFL
RPQRAALYILGDKAQLKGVRSDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPAAEP
SPASFLRSLEDSEWLIQIHKLLQVSVLVVELLDSGSSVLVGLEDGWDITTQVVSLVQLLS
DPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVHQVHLQFPM
EFEFSQFYLKFLGYHHVSRRFRTFLLDSDYERI
ELGLLYEEKGERRGQVPCRSVWEYVDR
LSKRTPVFHNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPE
EERSDGGAPQSRRRVVWPCYDSCPRAQPDAISRLLEELQRLETELGQPAERWKDTWDRVK
AAQRLEGRPDGRGTPSSLLVSTAPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTTSGS
RQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRV
DTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDR
IQSCLS
DA
Sequence length 1868
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Synthesis of PIPs at the ER membrane
RAB GEFs exchange GTP for GDP on RABs
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Charcot-Marie-Tooth Disease charcot-marie-tooth disease type 4b3, charcot-marie-tooth disease type 4 rs587776986, rs1569512576, rs1009209509 N/A
Microcephaly microcephaly rs587776986 N/A
autism spectrum disorder Autism spectrum disorder rs1569513495 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Charcot-Marie-Tooth Disease, X-Linked Charcot-Marie-Tooth disease X-linked dominant 1 N/A N/A ClinVar
Dementia Dementia N/A N/A GWAS
Hypothyroidism Hypothyroidism N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Bovine Respiratory Disease Complex Associate 32444983
Charcot Marie Tooth Disease Associate 34169998
Charcot Marie Tooth disease Type 4E Associate 32444983
Demyelinating Diseases Associate 12687498
Dyskinesia Familial with Facial Myokymia Associate 36272304
Glaucoma Associate 12687498
Intellectual Disability Associate 34118926
Leukemia Myelogenous Chronic BCR ABL Positive Inhibit 36086954
Leukemia Myelogenous Chronic BCR ABL Positive Associate 36086954, 37774059
Mitochondrial Diseases Associate 34118926